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Report for CCDS39672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39672.1 Public Mus musculus 6 Prb1b 23 108 98 CCDS HistoryNCBI Gene:381832Re-query CCDS DB by CCDS ID:39672.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048686.8 ENSMUSP00000047347.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048686.8Link to Ensembl Protein Viewer:ENSMUSP00000047347.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048686Re-query CCDS DB by Protein ID:ENSMUSP00000047347
Original member Current member NCBI NM_001024705.2 NP_001019876.2 Accepted alive Link to Nucleotide Sequence:NM_001024705.2Link to Protein Sequence:NP_001019876.2Re-query CCDS DB by Nucleotide ID:NM_001024705Re-query CCDS DB by Protein ID:NP_001019876Link to BLAST:NP_001019876.2

Chromosomal Locations for CCDS 39672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132311969 132312759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132313635 132313670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132314666 132314729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCTGGTTGTCCTGCTCACAGCAGCTTTGCTGGTCCTGAGCTCAGCTCAGAGACAAGATGAAGAGATCA
CCTACGAAGACTCAAATTCTCAGCTCCTAGAGATGGGAGAGCAGAGCCAAGGGTATGGTCATCATTTTCC
AAAACCACCTCCTGGAGGAATGCCCCCAAGACCTCCCAGTTCTGATGAAAATGATGATGGTGATGAAGAT
GGCAGTGAGGAAGATGTGAATAGACCAGAGGAACCACCACAGCACCCTCCTCACCCAGGACACCACCATG
GTCCTCCCCCACAGGGAGGCCCCCAGCAGAGACCCCCTCAGCCTGGAAAACAACAAGGCCCACCACCACA
GGGAGGCCCACAGAGTCCCCTTAGGCCTGGAAACCAACAAGGCCCACCCCCACAGGGAGGCCCCCAGCAG
AGACCTCCTCAGCCTGGAAACCAACAAGGACCACCCCTACAGGGAGGCCCACAGGGACCCCTTAGGCCTG
GGAACCATGAAGGACCACCCCCACAGGGAGGCCCACAGGGACACCCTAGGCCTGGTAACCAACAAGGCCC
ACCTCCACAGGGAGGTCTTCAGAGACCTCCTCAGCCTGGAAACCAACAAGGCCCACCCCCACAGAGAGGC
CCCCAGCAGAGACCCCCTCAGCCTGGAAACCAACAAGGCCCACCCCCACAGGGAGGCCCCCAGCAGAGAC
CCCCTCAGCCTGGAAACCAACAAGGACCACCCCCACCAGGAAGCCCTCAGGGACCCCCTAGGCCTGGAAA
CCAACAAGGCCCACCCCCACAGGGAGGCCCTCAGAGACCTCCTCAGCCACGAAACCATCAAGGCCCACCC
CAATATGGAAACAATGAACAGCCAAGTTACCTGTGGTCACTTTTTGCATAA

Translation (296 aa):
MLVVLLTAALLVLSSAQRQDEEITYEDSNSQLLEMGEQSQGYGHHFPKPPPGGMPPRPPSSDENDDGDED
GSEEDVNRPEEPPQHPPHPGHHHGPPPQGGPQQRPPQPGKQQGPPPQGGPQSPLRPGNQQGPPPQGGPQQ
RPPQPGNQQGPPLQGGPQGPLRPGNHEGPPPQGGPQGHPRPGNQQGPPPQGGLQRPPQPGNQQGPPPQRG
PQQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGPPPPGSPQGPPRPGNQQGPPPQGGPQRPPQPRNHQGPP
QYGNNEQPSYLWSLFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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