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Report for CCDS30042.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30042.2 Reviewed, update pending Mus musculus X Jade3 23 108 98 CCDS HistoryNCBI Gene:382207Re-query CCDS DB by CCDS ID:30042.2See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 30042.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in some species.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30042.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115384.8 ENSMUSP00000111042.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115384.8Link to Ensembl Protein Viewer:ENSMUSP00000111042.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000115384Re-query CCDS DB by Protein ID:ENSMUSP00000111042
Original member NCBI NM_199317.2 NP_955021.2 Updated not alive Link to Nucleotide Sequence:NM_199317.2Link to Protein Sequence:NP_955021.2Re-query CCDS DB by Nucleotide ID:NM_199317Re-query CCDS DB by Protein ID:NP_955021
Current member NCBI NM_199317.3 NP_955021.3 Pending alive Link to Nucleotide Sequence:NM_199317.3Link to Protein Sequence:NP_955021.3Re-query CCDS DB by Nucleotide ID:NM_199317Re-query CCDS DB by Protein ID:NP_955021Link to BLAST:NP_955021.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955021.3 823 Q6IE82 823 100% 0 0

Chromosomal Locations for CCDS 30042.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20460524 20460572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20462112 20462191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20479514 20479671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20489702 20489892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20494157 20494368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20499426 20499593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20502396 20502512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20511020 20511490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20512736 20512853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20516986 20517896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGATGAAACGGCATAGACCTGTCAGCAGCAGTGAGAGTTCAGATGAGTGTCCTTCCACTTCCTTTACTT
CTAGCTCAATGTATAGGAAGAAGTCAAAAAATCCTAAGGAACAGAAGAAGTCTGCTGAGGTATTCCGAAA
GGACCTCATCAGTGCCATGAAAATTCCTGACTCTCACCATGTTAATCCTGACAGCTATTACCTCTTTACT
GACACATGGAAAGAAGAATGGGAAAAAGGAGTCCAAGTACCAGCCAATCCAGACTCTGTTCCAACGCCGT
CTCTCAGGATTATATCTGAAAAAGTAAAGGAGATGCTTTTTGTCCGGCCCCGGAAATATATCCGTTGCTC
CAGCCCAGAGTCTGCAGAACCTGGCTATATCAATACCCTGGAGCAAGCAGCATCTACATGCCGCTATGAC
CTAGATGACATGGATATCTTTTGGCTTCAGGAACTCAATGAAGACCTTGGAGAAATGGGTTATGGCCCAA
TTGATGAGACTCTTATGGAAAAGACAATAGAAGTTCTGGAACGCCACTGCCATGAAAATATGAACCATGC
TATTGAAACAGTGGAAGGGCTAGGAATAGAATATGATGAAGATGTGATCTGTGATGTGTGCCGGTCTCCA
GACAGTGAAGAAGGGAATGATATGGTATTCTGTGATAAGTGTAACGTCTGTGTACATCAGGCTTGCTATG
GCATTCTCAAGATTCCAGAAGGTAGTTGGCTGTGCCGCTCCTGTGTCCTGGGCATTTATCCACAGTGTGT
TTTATGTCCTAAGAAAGGTGGAGCCATGAAGACCACCAGAACAGGGACTAAATGGGCTCATGTCAGCTGT
GCCCTGTGGATTCCAGAAGTCAGTATCGCTTGTCCTGAGAGAATGGAGCCTGTCACAAAAATCTCCCATA
TCCCACCTAGCCGGTGGGCCTTAGTTTGCAACCTGTGCAAGTTGAAGACAGGGGCTTGTATTCAGTGCTC
TGTGAAAAGCTGTATCACTGCCTTTCATGTCACCTGTGCCTTTGAGCACGGCCTGGAAATGAAGACCATC
CTAGATGAGGGGGATGAAGTAAAGTTCAAGTCATTTTGCCTCAAGCATAGCCAAAACAAGCCAAAACTTG
GGGACGCCGAGTACCACCACCACAGAGTCGCCGAGCAGAGCCAGGCAAAAAGTGAGAAAACCAGCCTACG
GGCACAGAAGCTTCGTGAACTAGAAGAAGAATTCTATACCTTAGTCCAGGTAGAAGATGTTGCCAAAGAG
ATGGAGTTATCTGCGTTCACTGTCGATTTTATCTATAACTACTGGAAACTAAAGCGCAAAAGCAACTTCA
ATAAGCCATTAATTCCCCCAAAAGAAGAGGAAGAAAATGGCTTGGTTCAGCCAAAAGAAGAAAGCATTCA
CACTCGGATGAGAATGTTTATGCATCTGCGGCAGGACCTTGAGAGGGTCCGAAATCTGTGCTACATGATA
AGCAGACGAGAGAAGCTGAAACTATCACACACCAAAGTGCAGGAACAGATTTTTGGTTTGCAAGTCCAGC
TTATCAATGAAGAAATTACAGAAGGACTTTCTTTGACAAATGCACTAGAGAACTCACTGTTTTATCCACC
ACCACGAATTACCTTAAAGTTAAAAATGCCTAAATCAACCTCAGAAGATTGCAAAGACAGCTCCACAGAA
ACTGAACACCAACTCTCGTCTCCTGGCAGCAGCTCCCCTGGTCACAGTAAAAGGAGCCCTCAGATGCCTG
AGGAACCACTGGATATGAATGTGAAAATATATCCAAGATATCCACTAGAAAGCAAAAGTAACTGTTTGCA
GACTAGCCGAAGCCATTCTCGATGTGAAACCAAGAGCTCCAGTCCTACTCCGAGAGCTCCATCTGCAGAA
TTCTATCATGGGCAATCACTAGGGAAGCCTCTGGCCCTTCAGGCTGCCCTCCATGGACAGGTGTCTATTG
GTAATGGGAAGAATCAGCCTAACTCCAGGGTTTCTAGTTCCAATGGCCTGGAGGGCAACTGGTCTGGGAA
CATCACCCAGAAAGTTAATTCAAGTGAGGTGTGCTATGACCAGGAGTCCATGCTCAGCTCCCACTTACCC
AGTCCAGGCAACATTAGAAAATCTAGCATGGAACATTTCAGCAGGTCCTTCAAGGAGGCCACCAATACAT
GGGTGAAGCCTACTGAGGACCTCCAGTACTGTGTTAAGCCAACTAAGAATGTGAGCTCTAAGGAGCAGTT
GTGGGGTAGACAGCTTCTCAGGCGTCCCACAGGAAGAGCTTCATATCAGGAAACTGATGGCTATTGCCCT
GATTTGGAGCCCAGTGATTCAGAAGCAGAAGGGGAGGGGAGTAAAGAAACACCAAGGGTAAAGAGAGAGA
GTTCTGACAGAGAAAATCCTTCCCATGATTCTGCTCGGGAGTGCCATGGGAAAACCAAGACACACCCTCA
TTCCCACAGCTCAATGCAAAGGTGA

Translation (824 aa):
MMKRHRPVSSSESSDECPSTSFTSSSMYRKKSKNPKEQKKSAEVFRKDLISAMKIPDSHHVNPDSYYLFT
DTWKEEWEKGVQVPANPDSVPTPSLRIISEKVKEMLFVRPRKYIRCSSPESAEPGYINTLEQAASTCRYD
LDDMDIFWLQELNEDLGEMGYGPIDETLMEKTIEVLERHCHENMNHAIETVEGLGIEYDEDVICDVCRSP
DSEEGNDMVFCDKCNVCVHQACYGILKIPEGSWLCRSCVLGIYPQCVLCPKKGGAMKTTRTGTKWAHVSC
ALWIPEVSIACPERMEPVTKISHIPPSRWALVCNLCKLKTGACIQCSVKSCITAFHVTCAFEHGLEMKTI
LDEGDEVKFKSFCLKHSQNKPKLGDAEYHHHRVAEQSQAKSEKTSLRAQKLRELEEEFYTLVQVEDVAKE
MELSAFTVDFIYNYWKLKRKSNFNKPLIPPKEEEENGLVQPKEESIHTRMRMFMHLRQDLERVRNLCYMI
SRREKLKLSHTKVQEQIFGLQVQLINEEITEGLSLTNALENSLFYPPPRITLKLKMPKSTSEDCKDSSTE
TEHQLSSPGSSSPGHSKRSPQMPEEPLDMNVKIYPRYPLESKSNCLQTSRSHSRCETKSSSPTPRAPSAE
FYHGQSLGKPLALQAALHGQVSIGNGKNQPNSRVSSSNGLEGNWSGNITQKVNSSEVCYDQESMLSSHLP
SPGNIRKSSMEHFSRSFKEATNTWVKPTEDLQYCVKPTKNVSSKEQLWGRQLLRRPTGRASYQETDGYCP
DLEPSDSEAEGEGSKETPRVKRESSDRENPSHDSARECHGKTKTHPHSHSSMQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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