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Report for CCDS18683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18683.1 Public Mus musculus 4 Fndc5 23 108 98 CCDS HistoryNCBI Gene:384061Re-query CCDS DB by CCDS ID:18683.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102600.3 ENSMUSP00000099660.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102600.3Link to Ensembl Protein Viewer:ENSMUSP00000099660.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102600Re-query CCDS DB by Protein ID:ENSMUSP00000099660
Original member Current member NCBI NM_027402.4 NP_081678.1 Accepted alive Link to Nucleotide Sequence:NM_027402.4Link to Protein Sequence:NP_081678.1Re-query CCDS DB by Nucleotide ID:NM_027402Re-query CCDS DB by Protein ID:NP_081678Link to BLAST:NP_081678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081678.1 209 Q8K4Z2 209 100% 0 0

Chromosomal Locations for CCDS 18683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129137079 129137163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129138691 129138806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129139343 129139541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129139841 129139930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129142062 129142195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129142535 129142540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGCCCCCAGGGCCGTGCGCCTGGCCGCCCCGCGCCGCGCTCCGCCTGTGGCTAGGCTGCGTCTGCTTCG
CGCTGGTGCAGGCGGACAGCCCCTCAGCCCCTGTGAACGTGACCGTCCGGCACCTCAAGGCCAACTCTGC
CGTGGTCAGCTGGGATGTCCTGGAGGATGAAGTGGTCATTGGCTTTGCCATCTCTCAGCAGAAGAAGGAT
GTGCGGATGCTCCGGTTCATTCAGGAGGTGAACACCACCACCCGGTCCTGCGCTCTCTGGGACCTGGAGG
AGGACACAGAATATATCGTCCATGTGCAGGCCATCTCCATCCAGGGACAGAGCCCAGCCAGTGAGCCTGT
GCTCTTCAAGACCCCACGCGAGGCTGAAAAGATGGCCTCAAAGAACAAAGATGAGGTGACCATGAAGGAG
ATGGGGAGGAACCAGCAGCTGCGAACGGGGGAGGTGCTGATCATTGTTGTGGTCCTCTTCATGTGGGCAG
GTGTTATAGCTCTCTTCTGCCGCCAGTATGATATCATCAAGGACAACGAGCCCAATAACAACAAGGAGAA
AACCAAGAGCGCATCAGAAACCAGCACACCGGAGCATCAGGGTGGGGGTCTCCTCCGCAGCAAGATATGA

Translation (209 aa):
MPPGPCAWPPRAALRLWLGCVCFALVQADSPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKD
VRMLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPREAEKMASKNKDEVTMKE
MGRNQQLRTGEVLIIVVVLFMWAGVIALFCRQYDIIKDNEPNNNKEKTKSASETSTPEHQGGGLLRSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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