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Report for CCDS52091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52091.1 Public Mus musculus 7 Vmn1r123 23 108 98 CCDS HistoryNCBI Gene:384695Re-query CCDS DB by CCDS ID:52091.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166948.1 ENSMUSP00000125823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166948.1Link to Ensembl Protein Viewer:ENSMUSP00000125823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166948Re-query CCDS DB by Protein ID:ENSMUSP00000125823
Original member Current member NCBI NM_001166707.1 NP_001160179.1 Accepted alive Link to Nucleotide Sequence:NM_001166707.1Link to Protein Sequence:NP_001160179.1Re-query CCDS DB by Nucleotide ID:NM_001166707Re-query CCDS DB by Protein ID:NP_001160179Link to BLAST:NP_001160179.1

Chromosomal Locations for CCDS 52091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 21162185 21163108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTCTGCTCATGGTAAATCCCTGAAAACCACTGAGGAAGTGGCTCTTCAACTCCTCTTGCTTTGCCAGT
TTGGGGTTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAA
ACAGAGGCCCAGACAGGTGATTTTAATCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATA
TTTCCAAACAACATGAGTGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATGTAAATTGGAATTCT
TCAGTCACATGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCAC
TCTTGTTCCTGTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTATCCCAAATTTGTGGAATTAT
TCTTGCTACAATTGTTGGTTTTACAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCAC
AGATAACAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCAT
GGTCTTCTTGCAGTTTGCCTATGATGCCACATTCATGATCATCATGGTCTGGACCAGTGTCTCCATGGTA
CTTCTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAG
CTGAGACCAGAGCAACTCGTACTATCCTGATGCTGGTGGTCACATTTGTTAGCTTTTATCTTCTAAATTT
TATTTGTATCATCTTTCATGCCTTTTCTATACATTCTCATCTCTTCATAAGGCTTGTCAGTGTGGTTCTG
GCTGCAGTCTTCCCCAGTATCTGCCCCTTACTGTTGATCTTCAGAGATCCTAAAGATCCTTGTTCTGTGA
TCTTCAAATGTTGA

Translation (307 aa):
MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTI
FPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNY
SCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMV
LLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVL
AAVFPSICPLLLIFRDPKDPCSVIFKC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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