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Report for CCDS49870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49870.1 Public Mus musculus 16 Nxpe3 23 108 98 CCDS HistoryNCBI Gene:385658Re-query CCDS DB by CCDS ID:49870.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099705.4 ENSMUSP00000097296.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099705.4Link to Ensembl Protein Viewer:ENSMUSP00000097296.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099705Re-query CCDS DB by Protein ID:ENSMUSP00000097296
Original member Current member NCBI NM_001134457.1 NP_001127929.1 Accepted alive Link to Nucleotide Sequence:NM_001134457.1Link to Protein Sequence:NP_001127929.1Re-query CCDS DB by Nucleotide ID:NM_001134457Re-query CCDS DB by Protein ID:NP_001127929Link to BLAST:NP_001127929.1

Chromosomal Locations for CCDS 49870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55844176 55844726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55849612 55849818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55860306 55860379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55865796 55866550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55890582 55890674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGTGGACCAACTTCTTCAAACTGCGCGTCTTCTGCTACCTGTTTGTGGTGCTGATGGTGGTGGTGTTGG
TCGTCAATGTCACCCAAGTGGAGTACTTGGACCATGAGACGCTGTCAGAGACGTTCATCGACAGCAGCGG
ACAGTATGTTTCCTCGCAGGCTACAGGCTTCAGTCGGAATGCGTACTGCGGCTATGAGCACCAGACCCTG
TCTAGTCAGGAACGCTTAGAGGAGGATGCCTTGCTTGCTGCCTCCAAGTGGAAGGTGCCTGACGTGGATC
TGGTCCCATTTGTGAGGAGCACGGACCCTTCCTCCAGCTACTTCGTCATCTTGAACTCTGCAACCTTCTT
CAGGGTGGGGAGCCGGCTGGAGGTGCTGGTTCATGTGCAGGATTTTCGAGGGAAGCCCAAGAAGTATGGC
GGAGATTACCTGCAGGCCAGAATACACTCGCCTAAGCTGCAGGCCGGCGCCGTGGGCCGCGTGGTAGACT
ACCAGAATGGATTTTACAAGGTGTTTTTTACTTTGCTCTGGCCAGGCAGAGTCAGAGTGTCCGTATCTCT
GGTTCACCCCAGTGAAGGGATCAGAGTCCTTCAGCGCCTGCAGGAAGAGAAACCAGACAGGGTCTATTTC
AAGAGTCTCTTCCGATCGGGAAGGATTTCTGAAACAATGAAGTGCAATGTGTGTCTTCCTGGAAGTCTTC
CCTTGTGCAACTTTACGGATCTGTCCACCGGAGAGCCCTGGTTCTGCTTCAAACCAAAGAAACTCCCCTG
CAGCAGCAGAATCAACCACTTCAAGGGCGGATACACGAAGGGCCTTCTCACAGCTGCCGAAAGTGCTCTC
TTTCAGAGTGGTGTGAATATCAAGATGCCAATCAACTCCAGCGGGCCTGACTGGGTGACTGTGATTTCCA
GGCGAACGAAAGAAACTGATGACTTAGAAGTATCTCAAGGCTCAGGAATTTTTCCCTCCGGATATTTCTA
CAAAAACCAGTGGAGGCCCAGGAGGTTCAAGATGCGCCACTTTAATGACCCCGACAACATTACGGAATGC
TTGCAAGGAAAAATGGTGTATTTGTTCGGTGACTCGACAATCAGGCAGTGGTTTGAATACCTCACTGCAT
TTGTTCCAGATTTAGTGGAGTTCAATTTGGGCAGTCCCAAGAATGTCGGTCCCTTCCTTGCAGTGGACCA
GAAACACAACGTCTTGCTCAGCTATCGCTGTCATGGTCCACCCATTCGCTTCACGAGCGTCTTTAGTAAT
GAGCTCCATTACGTGGCAAATGAACTGAACAGGCTCGTGGGAGGGAAGAACACAGTGGTGGCCATAGCCG
TATGGTCTCACTTTAGCACGTTCCCCTTGGAAGTCTACATCCGGAGGCTCAGGAACATCAGGCGGGCAGT
GGTCCAACTCCTGGACCGAAGTCCTAAGACAGTGGTTGTCATCCGGACAGGCAATGCCCAAGAGCTGGGG
CCTGAGGTGAGCCTTTACAACAGTGACTGGTACAACTTTCAGCTGGACACTGTCCTTCGGAGGATGTTTT
CAGGGGTCGGAGTCTACCTTGTTGATGCCTGGGAGATGACCTTGGCTCATCACCTACCCCACAAACTGCA
TCCAGATGAAGTGATCGTGAAGAACCAGCTGGACATGTTCTTATCTTACGTATGCCCCTTGGAGACCTAG

Translation (559 aa):
MWTNFFKLRVFCYLFVVLMVVVLVVNVTQVEYLDHETLSETFIDSSGQYVSSQATGFSRNAYCGYEHQTL
SSQERLEEDALLAASKWKVPDVDLVPFVRSTDPSSSYFVILNSATFFRVGSRLEVLVHVQDFRGKPKKYG
GDYLQARIHSPKLQAGAVGRVVDYQNGFYKVFFTLLWPGRVRVSVSLVHPSEGIRVLQRLQEEKPDRVYF
KSLFRSGRISETMKCNVCLPGSLPLCNFTDLSTGEPWFCFKPKKLPCSSRINHFKGGYTKGLLTAAESAL
FQSGVNIKMPINSSGPDWVTVISRRTKETDDLEVSQGSGIFPSGYFYKNQWRPRRFKMRHFNDPDNITEC
LQGKMVYLFGDSTIRQWFEYLTAFVPDLVEFNLGSPKNVGPFLAVDQKHNVLLSYRCHGPPIRFTSVFSN
ELHYVANELNRLVGGKNTVVAIAVWSHFSTFPLEVYIRRLRNIRRAVVQLLDRSPKTVVVIRTGNAQELG
PEVSLYNSDWYNFQLDTVLRRMFSGVGVYLVDAWEMTLAHHLPHKLHPDEVIVKNQLDMFLSYVCPLET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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