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Report for CCDS46502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46502.1 Public Homo sapiens 2 DYTN 24 110 108 CCDS HistoryNCBI Gene:391475Re-query CCDS DB by CCDS ID:46502.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46502.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452335.2 ENSP00000396593.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452335.2Link to Ensembl Protein Viewer:ENSP00000396593.2Re-query CCDS DB by Nucleotide ID:ENST00000452335Re-query CCDS DB by Protein ID:ENSP00000396593
Original member Current member NCBI NM_001093730.1 NP_001087199.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001093730.1Link to Protein Sequence:NP_001087199.1Re-query CCDS DB by Nucleotide ID:NM_001093730Re-query CCDS DB by Protein ID:NP_001087199Link to BLAST:NP_001087199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087199.1 578 A2CJ06 578 100% 0 0

Chromosomal Locations for CCDS 46502.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 206651818 206651921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206662903 206663395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206665870 206666029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206693175 206693323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206694766 206694877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206699727 206699890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206700145 206700216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206704843 206704943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206705788 206705873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206707302 206707503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206710524 206710598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 206718261 206718279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGATCCAGATAAACAAGATGCTCTTAATAGTATTGAGAATTCCATTTATAGAACAGCCTTCAAATTAC
AATCAGTGCAAACTCTGTGCCAGTTGGACTTGATTGACAGCTCCCTGATTCAGCAGGTCCTACTGCGTCC
AAGTTTCTGGGAAGCTCGCAAGCACTCCCTTTCTGTGCAGCAACTTTCTCAGGCACTCCAAGAGCTGTTT
CAGAAGGCCAGGGAGGAAAACCCAGGACAAGTGCATCCCAGAGCTCCGGAACTCACTCTGAGCCTTCTCA
CGACAATGTACAACAGCAAAGGAACAGGTTTTCTCCAGCTTATGCCTGCGGCCGCTGCCCTAATAACCCT
CTCAGGAGACAGCCCTCTTTCAAAATACCGAGCTCTTTTTCAACTCTATGCAGAAAATAGCAGGGGAGGC
TATGATTCTGGGCCACGCATGACTCGAAGGGTTTTGAGAAAACTACTAACAGATCTACAGCAGATCCCAA
CTTTCGTGGGAGAGAGTCGTGCTCTGTGCCCTGTGGAAAGTGCCACCCGCAGCTGTTTCCAAGGGGTGTT
GAGCCCAGCAATCAAAGAAGAAAAATTCCTGTCTTGGGTCCAATCTGAGCCTCCCATCCTCCTGTGGCTC
CCGACCTGCCACCGGTTATCAGCTGCTGAAAGGGTCACTCACCCTGCTCGGTGCACTCTCTGCAGGACTT
TCCCAATCACGGGACTCAGATACCGCTGTCTGAAGTGTCTCAACTTTGACATCTGCCAGATGTGTTTCTT
ATCTGGTCTTCACAGCAAGTCCCATCAGAAGTCTCATCCTGTCATTGAGCACTGCATTCAGATGTCAGCA
ATGCAGAATACAAAACTTCTCTTCAGGACCCTCAGAAACAACCTTCTTCAGGGGCGCTGTAGGAAGAAAG
AAGCAGCGAGAAGGCAGCAGCTGCTGGACCAGGTGAATCCAAAGGGTGTGCCTCACCATGCGCAGGCCAG
GCTCCTTAAAAAACAGTTAAACCAATACAAAGACAAGTTGCAAGCTATATACACCTCCCAGGAAGAAAGA
ATTTGTCGATTTGAAACAAGGATTCACAAACTCAAAACCAACCAGGATAGTCTATGGACCAAGCTACAAC
AGATAAGACGGGACCTACAGGCAAGGTTGCAGCCACCCGGTCCTTCATCTTCTTCCTTTCAAAATGTGGG
GAACAAGGTTGACCATTCTTCAACTGAAAAGGTTCCAAAGGGAGGGGATTATTTGCAGATCAAGAATGCC
ACTGAAGATGCTTCAACAGGGGAACCTCTTCCTAAGCTTGATGAGGTTGACAGAAGTCACAGAAGTCACA
CAAATGCAGAGCATGCTCTGCGAAATCCAGAATCACCAGAGACCACTTTGCACAGCACCAGGGCACAAAG
CCAAACACAAAAGATGCCACAGAAAGTCATTAGTGCCCTACCCAGTTATCAGGAGGGACTGAAGCAGGAC
ATCCCCAAAATGGTTCCTGCTGAAATGAGCAGTCCTGCTCTGGCAGCCGTGGAAAAGAAAGAGGCAGGTA
ACATCAAGGAGAGAAAGGATGAGCTGGAGGAAGAGGAACTGCAAGAACTATTGTCAAAACTTATGGATGC
CTTCAATCTAGAAACGCCATCAGGCCCGGAGTCTTCAGTAAACATGGACCTGTACAGTGGAGCTCAGCGA
GTGTGCAGGGCCTTCTCTGCCCTTGTTGATCAAATTGCCTTGCCCAATTTGAAGTGA

Translation (578 aa):
MDPDKQDALNSIENSIYRTAFKLQSVQTLCQLDLIDSSLIQQVLLRPSFWEARKHSLSVQQLSQALQELF
QKAREENPGQVHPRAPELTLSLLTTMYNSKGTGFLQLMPAAAALITLSGDSPLSKYRALFQLYAENSRGG
YDSGPRMTRRVLRKLLTDLQQIPTFVGESRALCPVESATRSCFQGVLSPAIKEEKFLSWVQSEPPILLWL
PTCHRLSAAERVTHPARCTLCRTFPITGLRYRCLKCLNFDICQMCFLSGLHSKSHQKSHPVIEHCIQMSA
MQNTKLLFRTLRNNLLQGRCRKKEAARRQQLLDQVNPKGVPHHAQARLLKKQLNQYKDKLQAIYTSQEER
ICRFETRIHKLKTNQDSLWTKLQQIRRDLQARLQPPGPSSSSFQNVGNKVDHSSTEKVPKGGDYLQIKNA
TEDASTGEPLPKLDEVDRSHRSHTNAEHALRNPESPETTLHSTRAQSQTQKMPQKVISALPSYQEGLKQD
IPKMVPAEMSSPALAAVEKKEAGNIKERKDELEEEELQELLSKLMDAFNLETPSGPESSVNMDLYSGAQR
VCRAFSALVDQIALPNLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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