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Report for CCDS40334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40334.1 Public Mus musculus 8 Primpol 23 108 98 CCDS HistoryNCBI Gene:408022Re-query CCDS DB by CCDS ID:40334.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 40334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040468.15 ENSMUSP00000036119.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040468.15Link to Ensembl Protein Viewer:ENSMUSP00000036119.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040468Re-query CCDS DB by Protein ID:ENSMUSP00000036119
Original member Current member EBI ENSMUST00000211400.1 ENSMUSP00000147574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211400.1Link to Ensembl Protein Viewer:ENSMUSP00000147574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211400Re-query CCDS DB by Protein ID:ENSMUSP00000147574
Original member Current member EBI ENSMUST00000209787.1 ENSMUSP00000148093.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209787.1Link to Ensembl Protein Viewer:ENSMUSP00000148093.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209787Re-query CCDS DB by Protein ID:ENSMUSP00000148093
Original member Current member NCBI NM_001001184.2 NP_001001184.1 Accepted alive Link to Nucleotide Sequence:NM_001001184.2Link to Protein Sequence:NP_001001184.1Re-query CCDS DB by Nucleotide ID:NM_001001184Re-query CCDS DB by Protein ID:NP_001001184Link to BLAST:NP_001001184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001184.1 537 Q6P1E7-1 537 100% 0 0

Chromosomal Locations for CCDS 40334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 46578924 46579166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46581438 46581484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46581568 46581650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46586343 46586451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46586607 46586696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46590215 46590303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46592593 46592755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46593470 46593703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46599719 46599866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46605085 46605214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46607804 46607901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46610440 46610619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGTTGAGGAAATGGGAGGCAAGGGTGAAGCAGATTGAAGAGCGGGCATCCCACTATGAGAGGAAGCCAT
TGTCTTCCGTGTACAGACCAAGACTGGCCAAGCCAGAAGAACCATCCTCCATTTGGAAGCTATTTCACCG
TCAGAATCAAGCTTTTAATTTTGTTAAAAGCTGTAAAGAGAGCGTTCACGTATTTGCTTTGGAGTGCAAA
AGGGGAAATGGACAACGTATTTACCTTGTAACGTCCTATGCCCAACTTTGGTTTTACTATAAGACCCGGA
AAACCCTCTTGCACTGCTATGAAGTTATTCCTGAGAATGCTGTGTGCAAGCTTTATTTTGATTTAGAATT
TAACAAATTGGCCAACCCAGGAGCTGATGGGAAGATGATGGTTGCATTGCTCATACAGCATGTTTGTAAA
GCACTTGAGGAGTTTTACAATGTTCAGTGCTCAGCCGAAGATGTTTTCAACCTGGATTCCAGCACTGAAG
AGAAATTTAGCCGACACCTAATATTTCAGCTCCACAATGTGGCATTTAAAGATAACAGGCATGCTGGTAA
TTTTGTGAGAAAAATTTTGCAACCTGCTCTTCACTTGATTGCCGAGGATGATGAAGCTAAGGTCCCAGAG
GCGGTGGGCCAGGACGCCTCCGGTTTTTCTGTTACACCATTAAAACAAGAGATTTCAGAGGCCCGGGAGA
AGGTGGGGTTGCCTAAGCAGTGTGACCCCGATCTTTCATTTTTAGTTGTGAAAAATCACATGGGAGAAAA
ATGCCTTTTTGTGGATCTAGGAGTGTATACAAAAAACAGAAACTTTCGACTGTATCAGTCATCCAAAATA
GGAAAGTGTGTGTCTTTGGAGGTTGCTGAAGATAACAGATTTATTCCAAAACAGTCAAAAGATATTTCTG
AGGAAAACCAGTATTTCCTATCTTCCCTGGTGAGCAATGTCAGATTCTCAGATACTCTGCGAGTTCTCAC
ATGCCACCCATCTCAGACTAAACGAAAGCGGGCTGAGTGTTTTAACAGTACTGGCACTTCAGTGGAGTCC
ATTGAAGGCTTCCAGGGCTCCCCATACCCTGAGGTTGACCAATTTGTTCTTTCTTTGGTGAACAAACATG
ACATTAAAGGAGGGATTCGGCGTTGGAACTACTTTTTCCCGGAAGAATTACTGGTTTATGATATATGCAA
ATACCGCTGGTGTGAAAACATTGGAAGAGCCCACAAGAGTAATAATATAATGATTCTGGTTGATCTGAAG
AATGAAGTTTGGTATCAGAAATGCCATGACCCTGTCTGTAAAGCACAAAACTTCAAATCTACCTGTTCCC
CATTACCCACTGAAGTAAGTCTGCTATTTCTTCTGAAAGATGAAGACTTCACTTCTGGAGAAACAGATGA
CACCAGCACCTCACTGACCAAGGATTCTCAAACCCCGCCATCCTGCAACTTGTCAGCCGGCGGGCTTTCT
GCCGCTGCCTGGGATGACGAAGATGACGCCCTTTTCTTAGAAGCGACAGAAGATGCTGAATTTGCTGACG
CTGCAGATAAGAGCCTTGGTTCAATGGATGATATTCCTGATGAACTAATTATAGAAGCTTTACAGAATAG
CTGA

Translation (537 aa):
MLRKWEARVKQIEERASHYERKPLSSVYRPRLAKPEEPSSIWKLFHRQNQAFNFVKSCKESVHVFALECK
RGNGQRIYLVTSYAQLWFYYKTRKTLLHCYEVIPENAVCKLYFDLEFNKLANPGADGKMMVALLIQHVCK
ALEEFYNVQCSAEDVFNLDSSTEEKFSRHLIFQLHNVAFKDNRHAGNFVRKILQPALHLIAEDDEAKVPE
AVGQDASGFSVTPLKQEISEAREKVGLPKQCDPDLSFLVVKNHMGEKCLFVDLGVYTKNRNFRLYQSSKI
GKCVSLEVAEDNRFIPKQSKDISEENQYFLSSLVSNVRFSDTLRVLTCHPSQTKRKRAECFNSTGTSVES
IEGFQGSPYPEVDQFVLSLVNKHDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNIMILVDLK
NEVWYQKCHDPVCKAQNFKSTCSPLPTEVSLLFLLKDEDFTSGETDDTSTSLTKDSQTPPSCNLSAGGLS
AAAWDDEDDALFLEATEDAEFADAADKSLGSMDDIPDELIIEALQNS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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