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Report for CCDS29895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29895.1 Public Mus musculus 19 Itprip 23 108 98 CCDS HistoryNCBI Gene:414801Re-query CCDS DB by CCDS ID:29895.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095998.6 ENSMUSP00000093697.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095998.6Link to Ensembl Protein Viewer:ENSMUSP00000093697.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095998Re-query CCDS DB by Protein ID:ENSMUSP00000093697
Original member NCBI NM_001001738.3 NP_001001738.2 Updated not alive Link to Nucleotide Sequence:NM_001001738.3Link to Protein Sequence:NP_001001738.2Re-query CCDS DB by Nucleotide ID:NM_001001738Re-query CCDS DB by Protein ID:NP_001001738
Current member NCBI NM_001001738.4 NP_001001738.2 Accepted alive Link to Nucleotide Sequence:NM_001001738.4Link to Protein Sequence:NP_001001738.2Re-query CCDS DB by Nucleotide ID:NM_001001738Re-query CCDS DB by Protein ID:NP_001001738Link to BLAST:NP_001001738.2
Original member NCBI NM_001362458.1 NP_001349387.1 Updated not alive Link to Nucleotide Sequence:NM_001362458.1Link to Protein Sequence:NP_001349387.1Re-query CCDS DB by Nucleotide ID:NM_001362458Re-query CCDS DB by Protein ID:NP_001349387
Current member NCBI NM_001362458.2 NP_001349387.1 Accepted alive Link to Nucleotide Sequence:NM_001362458.2Link to Protein Sequence:NP_001349387.1Re-query CCDS DB by Nucleotide ID:NM_001362458Re-query CCDS DB by Protein ID:NP_001349387Link to BLAST:NP_001349387.1
Original member NCBI NM_001362459.1 NP_001349388.1 Updated not alive Link to Nucleotide Sequence:NM_001362459.1Link to Protein Sequence:NP_001349388.1Re-query CCDS DB by Nucleotide ID:NM_001362459Re-query CCDS DB by Protein ID:NP_001349388
Current member NCBI NM_001362459.2 NP_001349388.1 Accepted alive Link to Nucleotide Sequence:NM_001362459.2Link to Protein Sequence:NP_001349388.1Re-query CCDS DB by Nucleotide ID:NM_001362459Re-query CCDS DB by Protein ID:NP_001349388Link to BLAST:NP_001349388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001738.2 555 Q3TNL8-1 555 100% 0 0
NP_001349387.1 555 Q3TNL8-1 555 100% 0 0
NP_001349388.1 555 Q3TNL8-1 555 100% 0 0

Chromosomal Locations for CCDS 29895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47896507 47898174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCCATGGAACTCTTCCGGGTCTGTCTGGTCGTGGTGACAGCCATCATTAACCACCCTCTGCTGTTCC
CACGGGAGAATGCCACGATTCCCGAGAACGAGGAAGAGATCATACGCAAGATGCAGGAGCACCAGGAGAA
GCTGCGCCTGGAGCAGCTACGCCTGGAGGAGGAGGTGTCACGTCTGGAGGCCGAGAAGGAGGCTCTGCGG
CAGGTGGAGGAGGAGCAGCAGCAGCTAGAGGCCCACACCGCCTGGGACCTCTGGACCACACTCTGCATGG
TCCTCTTCCTGATCATCGAGGTGTTGCGACAGAACCATCAGGAGGGCACCTTCCCGGAGTGCCTGGGTGG
AGACGAGGACGAGCTGTCGGGACTAGGGGGCACGCTGCTGCAGGGCCTTCCCCTGCCCAATAGGGCCACC
CTGGACCACTTCTACGAGCACTGTATCCGGAGCACCACGGGGGATGCCACCCGCACCCAGGAGTTTGTGG
AAGGTTTCGTGGATGATCTGCTGGAAGCCCTGAGGAGCACCTACAACGGGAAAACCGACATGGAATTGGA
GGACTTCATCGGCGTGGGCAGCATGTATGAGAACTGGCAAGTGGAGAGGCCACTACGGTGCCACTTGTTT
ATACCCTTCATACCCCCAGAGCCCTACAGCTTCCACCCAGAGTTCTGGTGCTCCAGCCTTTCAACGCCCC
TGGAACGTCAGGGCTATGGCCAGATCAAGGTGACGCTGGCTGACGGGAACCCTCTAGGCTGTGTCTGCGG
CAAGGCTAAGCTTGAGGAGGATATGTTGTGTCTCCTCTACGGCAAGAATAGAGGGGCGTGGCCCAGCAGT
GCCGGGTGCGGTGAGATGGAGGGCTTGCTGTGTTCCAGAGAGTCCTCCTATCTCGATGTCATGCAGGTCA
TGAAGTGGTTTCAGATGGCCCTCACCAGAGCGTGGCACCGCATCGCCCACAAGTATGAGTTTGACCTTGC
CTTTGGAGAGCTGGACACCCCAGGGTCTCTCAAAATCAAGTTCCGCTCGGGGAAGTCCATGCCTTTCATC
TTGACTCCTGTGATCCAGTGTAATGACTCAGACCTGTACTTCATCTTACAACTTCCCAAGGAGCCCTGTG
GGGGAGGCCCAGCCTCCAGCGCTCACTGGCTCCTGTCCTTTGCTGTCTATGAGCGAGAGTTCCTCCGGAT
GACAGGCAAGGCTTTGCCGGAGGGTGCCTGCCACCTGAGCTGTTTGCAGATCGCCTCCTTCTTGCTCTCC
AAGCAGACCCGTCTGACGGGTCCCAGTGGGCTGAGTGACTACCACCTAAAGACTGCCCTGCTGCATCTCC
TGCTGTCCCGGCAGGCCTCTGACTGGAAGGCCAGCAAGCTGGATGTACGCCTGCAGGACCTCTTCTGCTT
CCTGGAGAGGAGCCTGCTGGAGAAGAAACTCTATCACTTCTTCATGGGCAACCACAAGGTGCCTGAGGCT
CTGGGTCTCCCAGAGGTTGTGCGCAGAGCCGAGCCTCTCAATCTCTTCCGGCCCTTCGTCTTGCAGCGGA
CTCTTTACCGGAACACAGTGGACTCCTTCTATGAAATGCTTAAGAACGCCCCGGCGCTCATTAGCGAGTA
TTCCCTCCATGTCCCTTCAGTTCGTGCCAGCCCACCACCAAAAGCTGTCGTCTCGTAA

Translation (555 aa):
MAMELFRVCLVVVTAIINHPLLFPRENATIPENEEEIIRKMQEHQEKLRLEQLRLEEEVSRLEAEKEALR
QVEEEQQQLEAHTAWDLWTTLCMVLFLIIEVLRQNHQEGTFPECLGGDEDELSGLGGTLLQGLPLPNRAT
LDHFYEHCIRSTTGDATRTQEFVEGFVDDLLEALRSTYNGKTDMELEDFIGVGSMYENWQVERPLRCHLF
IPFIPPEPYSFHPEFWCSSLSTPLERQGYGQIKVTLADGNPLGCVCGKAKLEEDMLCLLYGKNRGAWPSS
AGCGEMEGLLCSRESSYLDVMQVMKWFQMALTRAWHRIAHKYEFDLAFGELDTPGSLKIKFRSGKSMPFI
LTPVIQCNDSDLYFILQLPKEPCGGGPASSAHWLLSFAVYEREFLRMTGKALPEGACHLSCLQIASFLLS
KQTRLTGPSGLSDYHLKTALLHLLLSRQASDWKASKLDVRLQDLFCFLERSLLEKKLYHFFMGNHKVPEA
LGLPEVVRRAEPLNLFRPFVLQRTLYRNTVDSFYEMLKNAPALISEYSLHVPSVRASPPPKAVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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