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Report for CCDS18448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18448.1 Public Mus musculus 4 Zyg11b 23 108 98 CCDS HistoryNCBI Gene:414872Re-query CCDS DB by CCDS ID:18448.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043616.6 ENSMUSP00000043844.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043616.6Link to Ensembl Protein Viewer:ENSMUSP00000043844.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043616Re-query CCDS DB by Protein ID:ENSMUSP00000043844
Original member NCBI NM_001033634.3 NP_001028806.2 Updated not alive Link to Nucleotide Sequence:NM_001033634.3Link to Protein Sequence:NP_001028806.2Re-query CCDS DB by Nucleotide ID:NM_001033634Re-query CCDS DB by Protein ID:NP_001028806
Current member NCBI NM_001033634.4 NP_001028806.2 Accepted alive Link to Nucleotide Sequence:NM_001033634.4Link to Protein Sequence:NP_001028806.2Re-query CCDS DB by Nucleotide ID:NM_001033634Re-query CCDS DB by Protein ID:NP_001028806Link to BLAST:NP_001028806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028806.2 744 Q3UFS0-1 744 100% 0 0

Chromosomal Locations for CCDS 18448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108236004 108236194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108237342 108237439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108241821 108241873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108242000 108242197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108244726 108244773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108244876 108245037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108250495 108250545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108250774 108250873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108252152 108252216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108255201 108255377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108259950 108260090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108265818 108266572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108272218 108272383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108300891 108300920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGCCGGAGGACCAGGCCCACGCAGCCATGGAGGAAGCCTCTCCCTATTCCTTGCTTGACATCTGCTTGA
GTTTCCTGACCACCAACCTCGAGAAGTTCTGCTCAGCACGCCAAGATGGAACCCTGTGTCTGCAGGAGCC
TGGGGTGTTCCCACAGGAGGTGGCTGACCGGCTTCTTCAGACTATAGCATTCCACGGTCTCCTGAATGAT
GGAACTGTGGGAATTTTCAGAGGTAACCAGATGCGCCTAAAGCGAGCTTGCATTCGCAAAGCAAAGATTT
CCGCTGTTGCTTTCCGGAAAGCCTTTTGCCACCACAAGCTAGTAGAACTTGATGCCACGGGTGTGAATGC
TGACATCACTATCACAGACATCATAAGTGGCCTTGGCAGTAACAAGTGGATCCAGCAAAATCTTCAGTGC
TTAGTACTAAACTCATTAACTCTGTCCCTCGAGGATCCATATGAGCGGTGCTTCAGCCGGCTCTCTGGTC
TTCGAGCTCTGAGCATCACTAATGTGCTCTTTTACAATGAAGATCTGGCTGAAGTTGCTTCGCTGCCTAG
ACTGGAGAGCCTGGATATTTCTAACACCTCAATCACAGATATCACTGCCCTGCTGGCCTGCAAAGACAGA
CTCAAGTCTCTCACCATGCACCATCTGAAATGTTTAAAAATGACTACTACCCAGATCCTGGATGTCGTTC
GGGAGCTAAAACATCTGAACCATCTTGACATCTCAGATGATAAACAGTTCACGTCAGACATAGCCCTTCG
ATTGTTAGAGCAAAAGGACATCTTGCCCAATCTTGTGTCCCTGGATGTTTCAGGGAGAAAGCATGTGACA
GACAAAGCTGTCGAAGCCTTTATACAGCAGCGGCCTAGCATGCAGTTCGTAGGGTTGCTGGCTACAGATG
CTGGATACTCTGAATTCCTTATGGGCAAAGGACACTTGAAGGTCTCTGGAGAAGCCAACGAAACCCAGAT
TGCAGAGGCGCTGAGGCGGTACAGCGAGCGGGCGTTTTTCGTTAGGGAGGCTTTGTTTCATCTCTTTAGC
CTGACTCATGTGATGGAGAAAACGAAGCCAGACATTTTAAAGCTTGTGGTTACTGGGATGAGAAACCACC
CAATGAATTTGCCCGTGCAGCTGGCTGCAAGTGCCTGTGTGTTTAACTTAACTAAGCAGGACCTTGCTTT
AGGCATGCCTGTCCGGCTCCTCGCTGATGTGACCCATTTGCTGCTCAAGGCCATGGAACATTTTCCTAAT
CACCAACAGTTACAGAAGAATTGCCTCCTCTCACTTTGCAGTGACCGGATTCTTCAAGATGTTCCATTTA
ATAGGTTTGAAGCAGCCAAGCTTGTCATGCAGTGGCTTTGCAACCACGAAGATCAGAACATGCAACGCAT
GGCCGTGGCTATCATTTCCATCCTGGCCGCCAAGCTCTCTACAGAACAAACTGCACAGCTTGGTGCTGAG
CTCTTCATTGTCAGGCAACTTCTTCAAATAGTGAAGCAGAAAACTAATCAGAATTCCGTGGACACTACGT
TGAAGTTTACTTTGAGTGCACTTTGGAACCTCACAGATGAGTCCCCAACCACGTGCAGACACTTCATTGA
AAACCAAGGGCTGGAGCTCTTCATGAGGGTTCTAGAGTCTTTCCCAACTGAGTCATCCATTCAACAAAAG
GTTCTAGGACTTTTGAACAACATAGCTGAAGTACAAGAGCTGCATTCTGAACTAATGTGGAAGGATTTTA
TAGACCACATCAGCAGTCTCCTACACAGTGTTGAAGTAGAAGTCAGTTACTTCGCAGCTGGAATTATCGC
CCATTTAATATCCAGAGGTGAACAAGCATGGACCTTGAGCCGAAGCCAGAGGAATTCTCTTCTTGATGAT
TTGCATTCAGCTATTTTGAAATGGCCAACTCCAGAGTGTGAGATGGTAGCATACAGGTCCTTTAATCCAT
TCTTTCCACTACTTGGCTGTTTTACGACTCCTGGAGTCCAGCTGTGGGCAGTTTGGGCCATGCAGCACGT
CTGCAGCAAGAATCCTTCAAGGTATTGCAGCATGCTGATTGAAGAAGGAGGACTGCAGCATTTGTATAAC
ATCAAAGAACACGAGCAGACAGATCCCTATGTCCAGCAGATTGCTGTGGCCATTCTGGACAGTTTAGAGA
AACACATTGTGCGCCATGGAAGGCCCCCTCCCTGTAAAAAGCAGCCCCAGGCCCGGCTGAATTGA

Translation (744 aa):
MPEDQAHAAMEEASPYSLLDICLSFLTTNLEKFCSARQDGTLCLQEPGVFPQEVADRLLQTIAFHGLLND
GTVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQC
LVLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDR
LKSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVT
DKAVEAFIQQRPSMQFVGLLATDAGYSEFLMGKGHLKVSGEANETQIAEALRRYSERAFFVREALFHLFS
LTHVMEKTKPDILKLVVTGMRNHPMNLPVQLAASACVFNLTKQDLALGMPVRLLADVTHLLLKAMEHFPN
HQQLQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAE
LFIVRQLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQK
VLGLLNNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDD
LHSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYN
IKEHEQTDPYVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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