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Report for CCDS40109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40109.1 Public Mus musculus 7 Abca15 23 108 98 CCDS HistoryNCBI Gene:320631Re-query CCDS DB by CCDS ID:40109.1Re-query CCDS DB by GeneID:320631See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076272.4 ENSMUSP00000075621.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076272.4Link to Ensembl Protein Viewer:ENSMUSP00000075621.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000076272Re-query CCDS DB by Protein ID:ENSMUSP00000075621
Original member Current member NCBI NM_177213.3 NP_796187.2 Accepted alive Link to Nucleotide Sequence:NM_177213.3Link to Protein Sequence:NP_796187.2Re-query CCDS DB by Nucleotide ID:NM_177213Re-query CCDS DB by Protein ID:NP_796187Link to BLAST:NP_796187.2

Chromosomal Locations for CCDS 40109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 120332171 120332230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120332586 120332850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120335128 120335255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120337167 120337317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120339989 120340248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120340541 120340657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120341165 120341282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120345243 120345416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120345976 120346154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120350757 120350891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120354462 120354591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120359666 120359820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120360868 120361023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120361345 120361555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120365756 120365906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120369136 120369234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120373694 120373847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120374865 120375156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120382260 120382506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120382646 120382850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120385085 120385301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120388097 120388270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120394337 120394515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120396599 120396724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120396936 120397130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120400583 120400770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120401709 120401879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120402903 120403084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120406936 120407009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120407408 120407521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5007 nt):
ATGGCTTCATGGGAGTCAAGAAAACTTTTGCTTCTTCTGTGGAAGAACTTTACTTTAAAGAGGCGGAAGT
TTGGGACTTTAGTTTCTGAGATAGTCCTGGTGCTTTTGCTCAGCATTGTGCTTTTGACAACACGCCACCT
TCTTAGTATAAAGAAGATTGAAGCTCTGTATTTTCCTGACCAACCTATCAGCACTGTTCCTTCCTTCTTC
CGAGCCTCTGTCACCAGTTTTTATCCTTGGGAGTTGGCTTATGTGCCTTCCAACATCATGGTGGTAGAGA
ATATTGTCAAAAATGTGAAAAATGATTTAAACCTTCATATGAAAGTTATAGGGTTTCCTTCAGAAAGTGA
TTTTGAAGATTATGCTAGGTCAACTGTCAACTCTAGAAATATTCTGGCTGCTATTGTGTTTGGCCACAAC
TTTGCAAACAGCAGTGATCCTCTGCCAAAGAAGGTAAAATACTACCTGAGATTTAGTGATATTAAGAAGA
ACATAAATTCTGGGGCATATTATCAAGGGGACACCTGGCTTACAAAATTTCTCTTTCATTCTTTGCGTCT
TGTGGGACCCAGAAACCCATATGAAGCAGACGGAGGCAGTCCTGGGTACATCACGGAAGGGTTCCTGGCT
GTGCAACATGCCCTAGACAAGGCCATCATGCTACATCATGGTGGAGCTGATGCAGCAGCACTCTTCAATG
ACATTAGTCTTTTCATTCAGAGATTTCCATACCCTGCATATTATCATGATTACTTCTATTTATTTGCTAC
TACTTTCATCCCTCTAACAGTGGCCTGCACCTTCTTTTTTAATCATTATGTCCTAGTTTGGTCCATTGTG
TGGGAAAAGGAAAACCGATTAAAGGAATACCAGCTCATGATAGGACTGAGAAACTGGATGTTCTGGGTTG
CCTATTTCTTCACCTTCCTCTGTCTGTATTTTATTAACATTATAGTTATGTGCATGGTTTTATTTGTCAA
GATTGAACCTGCGCCAATCTTCCAATACAATGACCCAACCCTTGTCTTCATCTTTTTGTTATTTTATGCC
ATCTCCTCGATATTCTTCAGTTTTATGGTTAGCACATTGTTTAATAAAGTCAGTTTGGCCATGAGCTTGG
GAAGTTTCTTATTTTTCCTCACCTACTTCCCAGCTGTTGCAATGCATCAGAGCTTTGAGCGCATGCCATC
CAAGCAGAAGCTGATCTGGTCCTTTGACTTTAATGTTGGGATGGCGTTTGGATTTAGATTCCTAGTCAAT
ACAGACGCAAAGAAAACTGGAATGAAATGGAGTAACATATTCCTATCCACGGATTCAGACAGCTTTTTAT
TTGCCTACGTGCTAGGGATGCTTTTAGCTGATGCTTTCATATATGGCCTTGTGGCCTGGTATATAGAAGC
TGTCTTTCCAGGAGAGTACGGTGTGCCCAAGCCGTGGAATTTTTTCTTGATGCACTCTTACTGGTTTGGA
GAACCACCTCAACAAAAACTAGAAATCACCCAATTTTATGAGAGAGTTGAAAGCAAGTACTTTGAAGCTG
AACCAACTGATTTGACAGCAGGCATACAGATCAAACACCTACACAAGGTATTCCAAAAGAATAACACCAC
CAAGGTCGCCATCAAAGACTTGTCTTTGAACTTATATGAGGGACAGGTCACTGTTCTTCTAGGACATAAT
GGGGCAGGAAAATCCACTACTCTGTCCATCCTCTCAGGTCTCTATCCTCCGACCAGTGGAGAGGCCTATG
TCCATGGAGAAGACATCTCCCAGCATATGGATCAAGTCAGGAATTCCTTGGGCTTATGTCCTCAGCAGAA
CCTGTTGTTTGATCACTTGACAGTATCCGAACACCTTTATTTCTACTGCAGGATAAAAGGAGTACCTCAA
AAGATGTATCTTGAGGAAACTAACAACATGCTGTCAGCTTTTAACCTGATGGAAAAGTGTGATGCATTTT
CGAAATCACTGAGCGGAGGCATGAAGCGCAAACTCGCCATCATTATAGCCCTGATAGGGGGCTCCAAGGT
GGCGATACTTGATGAGCCGACATCTGGCATGGACCCAGCCTCGAGGCGGAGCACCTGGGATATCCTTCAG
ACGTATAAACAGAATCGTACCATCCTGCTGACCACCCACTACATGGATGAAGCTGATGTGCTGGGCGATC
GCATTGCTATCATGGTCAGGGGGACCTTACGATGTTGCGGCTCCTCGGTCTTCCTGAAAAGACTATATGG
TGTTGGAAGCCACCTAGTCATGGTGAAGGAACCTTACTGTGACATTGCTGAAATCTCAAAACTGATTCAT
TCCTATGTCCCAACAGCCACCCTGGAGACTAATGTTGGAAATGAGTTATCTTTTATTCTACCCAAAGAAT
ATACACACAGGTTTGAAGCTCTCTTTACTGCTCTGGAAGAGAACCAAGAAAATCTTGGCATTTCTAGCTT
TGGTGTGTCTATCACTACCATGGAAGAAGTCTTCCTTAAGGTCAGTAACCTGGAAGACTCAAAAACAGAT
ATCGAAGCTACCCAGTCGCCCTCGGTAGGAAGCAAAGGGAACAAGAATGGGGATGTTGAAAGCAGCGGGA
GAGTAGGCTTTCCCACCCAGAGTGAAGATCAGAACATTGTGTTTAACACTGGGTGTTCCCTCTACCTGCA
GCAGTTCCGTGCCATGTTCATGAAGAGGCTGATGTACAACTGGCGAAACTGGAGAGGGATTTTGGTGCAG
ATACTGGGGCTTATCATTTCTACTTTCTTACTCCTCAAGTCTCATGAGTTTAGATATAAGAAAATTAGGC
AAATGAATTTGGACGAATATGGTCAAACCATTGTGCCTTTTTCTATTTGGGGGAAATCTAACTTGACATC
AAGTCTTTTAACACACCTTGAGAATATGCTAAAACCTGGCAACCACCAACTCAAGGAAGTACAAGGTGAC
CTACTCAAATATTTGGAGGGAAATGACGAATGCGTTCATTTATGTGTTATCGCACTTTCTATCAAGGTGG
TTGCAAATAGAGTAAACCTTACTGTTCTGTTCAACAATGAAGCCTACCATTCACCATCTCTATCCCTGAC
AGTTTTAGACAACATTCTTTTCATGTCACTTTCTGGTTCTGATGCTTCCATAACAGTCTTCAATAAACCT
CAGCCAAGCCCCCAGAGGAAAGAATGGCCGGGGAGTACAGATGGGAAGATTGTAGCCTTCAAAATTCAGC
TGGGCATGGCTCTTTTGGTCAGTGGCTTTTGCATCCTGACGGTGACTGAGAGACACAACAAGACAAAGCA
CATGCAGTTTCTGAGTGGGGTCTCCATCCTTGTGTACTGGCTTTCTGCTCTGGTATTTGATCTCATTATC
TTCTTCATTTCTTGCTGCTTCCTACTGGTTATGTTCAAATACTGCAAATTTGACATCTATGTCACCGACT
ACCACATTCTGGACACGATGCTGATCCTCACACTGTTTGGGTGGTCTGCCATCCCCCTCACATACCTGCT
GAGCTTCCTGTTTTCTAAGAGCAACTCTGCCTACATCAATCTTCTGGTGTTCTGTTATCTCTCTGGCACT
TTAAGTCTCTTAATGGATACCATAATAGAAGCAAGGATATCAACCATCATGTCCAACTCCACCCAAACCT
TCCTGCTCAATGCGCTGCTGCTCTTTCCTATGTACAACCTTGGGAAGTGTATCAGTGAGTATACTGTTAT
TTACCGGAAGAAGATGCTATGCATCCAGCAAAAGAACGCTCTCAAATACCTGAATTGTAGCAACAAACAC
ACTAAGAAGAACATTTATTCTTTGAAGAAACCTATGCTGGGAAAGTATTTAATTGCTATGAGCATCGCCG
GCTTTGTTTTCCTTCTTTTGATTTTCTTTTGGGAAAATATCTCCTGGAAAGTAAAAATGTTTATCCATCA
ACACATTTACTTTGGTGCCTGCAAGAAATACAAGCCGGATATAATTTCTAAGGAATTATCTGGGACTTCT
GAAGATAATGATGTAGAAAATGAGAGAAGAGAAATTTTGTACCAGCCTGAAAAGTTTCTGAATTGCCCAG
TTCTTATTAAGGAGCTCACGAAGATATACTTTAAGTCTCCACTAATTCTGGCTGTGAAAAATATCTCCCT
TGCTATCCAAGAGAGGGCGTGCTTTGGGTTACTTGGATTCAATGGAGCAGGTAAAACAACTACTTTTCAA
ATTTTGACTGGAGAAAATATTCCTACCGCCGGGGATGTGTTCATTGATGGCATTAGCCTCACCAAGAACA
TCGTAAAGGTCAGGTCAAAAATTGGCTATTGTCCTCAATTTGATGCTTTGCTGGAATACATGACTGGCTG
GGAAATAATGATCATGTATGCAAGAATATGGGGAATCTCAGAGCATCAGATTCAGCCCTACGTGAAAAAG
TACTTGAATTCTTTGGACCTGGAGTCTCATGCCAACAGTCTTATCAGCACCTACAGTGAAGGAAACAAAC
GTAGGCTGAGCACTGCCATTGCCACGATGGGAAAGCCCTCAGTTATCTTCCTGGATGAACCATCAACTGG
CATGGACCCAAGAGCTAGGCGCCTTCTCTGGGACACAGTGATAAAGATTCGTGAAAGTGGAAAGGCCATC
ATTATAACATCCCACAGCATGGAAGAATGCGAAGCCCTTTGTACAAGGCTATCCATAATGGTGCGTGGGA
GGCTCACATGCCTGGGTAGTCCTCAGTACCTCAAGAACAAGTTTGGTAATATTTATATTCTGAAGGCCAA
GGTCAAGTCTGGGGAAACATTAGATGAATTTAAAAATTTCATCACACTGACATTTCCAGGTAGTGAATTA
CAGCAAGAGAATCAAGGGATTCTTAATTACTGCATTCCCAGAAAGAACAACAGCTGGGGAAAGGTGTTTG
GCATTTTGGAGAAAGCAAAGGAACAATACAATTTAGAAGACTATTCCATCAGTCAGATCACCCTGGACCA
AGTCTTCTTGTCTTTTGCCGACCAAGACAGGAAGTGA

Translation (1668 aa):
MASWESRKLLLLLWKNFTLKRRKFGTLVSEIVLVLLLSIVLLTTRHLLSIKKIEALYFPDQPISTVPSFF
RASVTSFYPWELAYVPSNIMVVENIVKNVKNDLNLHMKVIGFPSESDFEDYARSTVNSRNILAAIVFGHN
FANSSDPLPKKVKYYLRFSDIKKNINSGAYYQGDTWLTKFLFHSLRLVGPRNPYEADGGSPGYITEGFLA
VQHALDKAIMLHHGGADAAALFNDISLFIQRFPYPAYYHDYFYLFATTFIPLTVACTFFFNHYVLVWSIV
WEKENRLKEYQLMIGLRNWMFWVAYFFTFLCLYFINIIVMCMVLFVKIEPAPIFQYNDPTLVFIFLLFYA
ISSIFFSFMVSTLFNKVSLAMSLGSFLFFLTYFPAVAMHQSFERMPSKQKLIWSFDFNVGMAFGFRFLVN
TDAKKTGMKWSNIFLSTDSDSFLFAYVLGMLLADAFIYGLVAWYIEAVFPGEYGVPKPWNFFLMHSYWFG
EPPQQKLEITQFYERVESKYFEAEPTDLTAGIQIKHLHKVFQKNNTTKVAIKDLSLNLYEGQVTVLLGHN
GAGKSTTLSILSGLYPPTSGEAYVHGEDISQHMDQVRNSLGLCPQQNLLFDHLTVSEHLYFYCRIKGVPQ
KMYLEETNNMLSAFNLMEKCDAFSKSLSGGMKRKLAIIIALIGGSKVAILDEPTSGMDPASRRSTWDILQ
TYKQNRTILLTTHYMDEADVLGDRIAIMVRGTLRCCGSSVFLKRLYGVGSHLVMVKEPYCDIAEISKLIH
SYVPTATLETNVGNELSFILPKEYTHRFEALFTALEENQENLGISSFGVSITTMEEVFLKVSNLEDSKTD
IEATQSPSVGSKGNKNGDVESSGRVGFPTQSEDQNIVFNTGCSLYLQQFRAMFMKRLMYNWRNWRGILVQ
ILGLIISTFLLLKSHEFRYKKIRQMNLDEYGQTIVPFSIWGKSNLTSSLLTHLENMLKPGNHQLKEVQGD
LLKYLEGNDECVHLCVIALSIKVVANRVNLTVLFNNEAYHSPSLSLTVLDNILFMSLSGSDASITVFNKP
QPSPQRKEWPGSTDGKIVAFKIQLGMALLVSGFCILTVTERHNKTKHMQFLSGVSILVYWLSALVFDLII
FFISCCFLLVMFKYCKFDIYVTDYHILDTMLILTLFGWSAIPLTYLLSFLFSKSNSAYINLLVFCYLSGT
LSLLMDTIIEARISTIMSNSTQTFLLNALLLFPMYNLGKCISEYTVIYRKKMLCIQQKNALKYLNCSNKH
TKKNIYSLKKPMLGKYLIAMSIAGFVFLLLIFFWENISWKVKMFIHQHIYFGACKKYKPDIISKELSGTS
EDNDVENERREILYQPEKFLNCPVLIKELTKIYFKSPLILAVKNISLAIQERACFGLLGFNGAGKTTTFQ
ILTGENIPTAGDVFIDGISLTKNIVKVRSKIGYCPQFDALLEYMTGWEIMIMYARIWGISEHQIQPYVKK
YLNSLDLESHANSLISTYSEGNKRRLSTAIATMGKPSVIFLDEPSTGMDPRARRLLWDTVIKIRESGKAI
IITSHSMEECEALCTRLSIMVRGRLTCLGSPQYLKNKFGNIYILKAKVKSGETLDEFKNFITLTFPGSEL
QQENQGILNYCIPRKNNSWGKVFGILEKAKEQYNLEDYSISQITLDQVFLSFADQDRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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