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Report for CCDS69978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69978.1 Public Mus musculus 1 Ly9 23 108 98 CCDS HistoryNCBI Gene:17085Re-query CCDS DB by CCDS ID:69978.1Re-query CCDS DB by GeneID:17085See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004827.13 ENSMUSP00000004827.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004827.13Link to Ensembl Protein Viewer:ENSMUSP00000004827.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004827Re-query CCDS DB by Protein ID:ENSMUSP00000004827
Original member NCBI NM_001277968.1 NP_001264897.1 Updated not alive Link to Nucleotide Sequence:NM_001277968.1Link to Protein Sequence:NP_001264897.1Re-query CCDS DB by Nucleotide ID:NM_001277968Re-query CCDS DB by Protein ID:NP_001264897
Current member NCBI NM_001277968.2 NP_001264897.1 Accepted alive Link to Nucleotide Sequence:NM_001277968.2Link to Protein Sequence:NP_001264897.1Re-query CCDS DB by Nucleotide ID:NM_001277968Re-query CCDS DB by Protein ID:NP_001264897Link to BLAST:NP_001264897.1

Chromosomal Locations for CCDS 69978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171589060 171589125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171593423 171593494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171593855 171594189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171596490 171596543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171597684 171597782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171599647 171599916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171600982 171601320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171601787 171602062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171607200 171607323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGCGGATCTAAAGAGATATTGGTGTGACTGGGCTCTAGGTCCACTCTCTGAAAATCCAAGAATGAGTC
AGCAGCAGATATTTTCTCCCATTCTTTGGATTCCTCTCCTCTTCCTACTCATGGAGAAGCTCCAGAAGCC
TCAGATCATCGTGGAATCTGTGACCCCATCCGATACTGATTCCTGCACCTTCACCCTAATCTGCACTGTA
AAGGGGACAAAGGACAGTGTCCAGTACAGCTGGACCCGAGAGGACACCCATTTAAATACATACGATGGAA
GCCACACCCTCAGGGTTTCCCAGAGTGTCTGTGACCCCGACCTACCCTATACCTGCAAAGCCTGGAATCC
AGTCAGCCAAAACAGCTCCCAACCTGTCCGCATCTGGCAATTCTGCACAGGAGCCTCCAGAAGAAAAACA
GCAGCGGGGAAGACTGTGGTAGGAATCCTGGGAGAGCCAGTGACCCTGCCCTTGGAATTTCGGGCCACTC
GGGCCACAAAGAATGTTGTCTGGGTGTTTAACACGTCGGTTATCAGCCAAGAACGGAGAGGAGCAGCAAC
AGCGGATTCTCGCCGTAAGCCCAAAGGTTCTGAAGAACGGAGGGTGAGGACCTCTGACCAGGACCAATCC
CTGAAGATCAGCCAGCTGAAGATGGAGGACGCGGGCCCCTACCATGCCTATGTGTGCTCAGAGGCCTCCC
GAGACCCCAGTGTGAGACATTTCACCTTGCTTGTCTACAAGAGACTGGAGAAGCCCAGTGTCACCAAGAG
TCCTGTGCACATGATGAACGGAATCTGCGAGGTTGTCCTGACCTGTTCAGTGGACGGTGGTGGAAACAAT
GTGACATACACATGGATGCCTCTACAAAACAAAGCTGTCATGTCCCAAGGGAAGTCGCACCTCAACGTCT
CCTGGGAAAGTGGTGAACACCTGCCCAACTTCACATGCACAGCCCATAACCCTGTCAGCAACAGCTCCAG
CCAGTTTTCTTCTGGGACCATCTGTTCAGGCCCTGAGAGAAACAAGAGGTTTTGGCTCCTGCTCCTCCTG
GTTTTGCTCTTGTTGATGCTCATTGGCGGTTACTTCATTTTGAGGAAAAAGAAGCAGTGTTCGTCTTTGG
CCACCAGGTACAGACAAGCGGAGGTCCCAGCTGAAATACCAGAAACCCCAACTGGCCATGGACAATTTTC
TGTGCTCTCCCAACGGTATGAGAAACTAGACATGTCTGCTAAGACCACCAGGCATCAGCCTACACCCACC
TCAGATACCAGCTCTGAGAGCAGCGCAACAACAGAAGAGGATGACGAAAAGACCAGAATGCACAGCACTG
CTAATAGTAGAAATCAGGTGTATGACTTGGTCACCCATCAGGACATTGCACATGCCTTGGCCTATGAGGG
GCAAGTAGAATATGAAGCAATCACTCCATATGATAAAGTGGATGGGTCTATGGATGAAGAGGACATGGCA
TATATACAAGTGTCCCTGAATGTGCAGGGAGAGACCCCACTTCCTCAGAAGAAAGAAGACTCAAATACAA
TCTACTGCTCTGTGCAGAAGCCTAAAAAGACGGCACAAACACCACAGCAAGATGCTGAGTCTCCTGAAAC
CCCTACCTATGAAAATTTCACCTGA

Translation (544 aa):
MADLKRYWCDWALGPLSENPRMSQQQIFSPILWIPLLFLLMEKLQKPQIIVESVTPSDTDSCTFTLICTV
KGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVCDPDLPYTCKAWNPVSQNSSQPVRIWQFCTGASRRKT
AAGKTVVGILGEPVTLPLEFRATRATKNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQS
LKISQLKMEDAGPYHAYVCSEASRDPSVRHFTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNN
VTYTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPERNKRFWLLLLL
VLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSVLSQRYEKLDMSAKTTRHQPTPT
SDTSSESSATTEEDDEKTRMHSTANSRNQVYDLVTHQDIAHALAYEGQVEYEAITPYDKVDGSMDEEDMA
YIQVSLNVQGETPLPQKKEDSNTIYCSVQKPKKTAQTPQQDAESPETPTYENFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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