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Report for CCDS21843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21843.1 Public Mus musculus 7 Tbx6 23 108 98 CCDS HistoryNCBI Gene:21389Re-query CCDS DB by CCDS ID:21843.1Re-query CCDS DB by GeneID:21389See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094037.4 ENSMUSP00000091579.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094037.4Link to Ensembl Protein Viewer:ENSMUSP00000091579.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094037Re-query CCDS DB by Protein ID:ENSMUSP00000091579
Original member Current member NCBI NM_011538.2 NP_035668.2 Accepted alive Link to Nucleotide Sequence:NM_011538.2Link to Protein Sequence:NP_035668.2Re-query CCDS DB by Nucleotide ID:NM_011538Re-query CCDS DB by Protein ID:NP_035668Link to BLAST:NP_035668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035668.2 436 P70327-1 436 100% 0 0

Chromosomal Locations for CCDS 21843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126781507 126781624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126781713 126781947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126782845 126783112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126783205 126783351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126783430 126783500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126784537 126784610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126784692 126784875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126784955 126785168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGTACCATCCACGAGAGTTGTACCCCTCCCTGGGGACTGGCTACCGTCTGGGACACCCCCAGCCTGGGG
CA
GACTCCACCTTCCCACCTGCCCTGACAGAGGGTTACCGCTACCCTGATTTGGATACTTCTAAACTGGA
T
TGCTTCCTCTCTGGGATCGAGGCAGCTCCCCACACTCTGGCTGCAGCCGCTCCTTTGCCCCTTCTCCCA
TCT
GCTCTGGGCCCCGAGACAGCACCGCCACCCCCAGAGGCCCTTCACTCGCTTCCTGGGGTCAGCCTGA
GC
TTGGAGAACCAGGAACTGTGGAAGGAATTCAGCGCTGTGGGGACAGAGATGATCATCACCAAGGCTGG
C
AGGCGCATGTTCCCTGCTTGCCGAGTATCAGTCACTGGCCTGGACCCAGAGGCCCGCTACTTGTTTCTT
CTG
GATGTGGTTCCAGTGGATGGGGCCCGATACCGCTGGCAGGGCCAGCACTGGGAGCCAAGTGGCAAGG
CT
GAACCCCGCCTACCCGACCGTGTCTACATTCACCCTGACTCTCCTGCCACTGGTGCCCACTGGATGCG
G
CAGCCCGTATCCTTCCATCGTGTTAAGCTCACCAACAGCACACTGGACCCCCATGGCCACCTGATCTTG
CAC
TCGATGCACAAGTACCAGCCTCGCATCCACCTGGTGAGAGCCACCCAACTATGCAGCCAACACTGGG
GG
GGTGTGGCCTCCTTCCGATTTCCTGAGACCACATTCATCTCTGTGACAGCCTACCAGAACCCTAGGAT
C
ACACAGCTGAAGATCGCAGCCAATCCCTTTGCCAAAGGTTTCCGAGAAAATGGCAGAAACTGTAAGAGG
GAG
CGGGATGCCCGTGTGAAGAGGAAACTTCGGGGCCCAGAGCCAGTGGCCACAGAGGCCTGTGGGAGTG
GG
GATACACCAGGGGGTCCCTGTGACTCCACCCTGGGTGGGGACATTCGGGACTCAGATCCAGAGCAGGC
C
CCAACCCCCCAGGAAGCTGCTTCTGCCTCAGCTCCTCCATGTGGGGGCCCCAGTGCTGAGGCCTACCTT
CTA
CACCCTGCCGCTTTTCATGGCGCCCCCAGTCACCTACCAGCCAGGACCCCCAGCTTCGCTGAGGCTC
CA
GACCCTGGGCGCCCAGCCCCCTACTCAGCTGCATTTCTGGACCTACAGCCTGGACCAGGGGGCTCTGC
C
TATCAGGCAGCTCCATCTGTACCATCCTTTGCCCCACACTTCATCCAAGGGGGTCCCTTCCCTCTACCG
TAC
CCAGGACCTGGAGGTTATCTGGACATGGGATCCAAGCCAATGTACTGA


Translation (436 aa):
MYHPRELYPSLGTGYRLGHPQPGADSTFPPALTEGYRYPDLDTSKLDCFLSGIEAAPHTLAAAAPLPLLP
S
ALGPETAPPPPEALHSLPGVSLSLENQELWKEFSAVGTEMIITKAG
RRMFPACRVSVTGLDPEARYLFL
L
DVVPVDGARYRWQGQHWEPSGKAEPRLPDRVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGH
LIL
H
SMHKYQPRIHLVRATQLCSQHWGGVASFRFPETTFISVTAYQNPR
ITQLKIAANPFAKGFRENGRNCKR
E
RDARVKRKLRGPEPVATEACGSG
DTPGGPCDSTLGGDIRDSDPEQAPTPQEAASASAPPCGGPSAEAYL
L
HPAAFHGAPSHLPA
RTPSFAEAPDPGRPAPYSAAFLDLQPGPGGSAYQAAPSVPSFAPHFIQGGPFPLP
Y
PGPGGYLDMGSKPMY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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