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Report for CCDS1965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1965.1 Public Homo sapiens 2 REG3A 24 110 108 CCDS HistoryNCBI Gene:5068Re-query CCDS DB by CCDS ID:1965.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1965.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305165.3 ENSP00000304311.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305165.3Link to Ensembl Protein Viewer:ENSP00000304311.2Re-query CCDS DB by Nucleotide ID:ENST00000305165Re-query CCDS DB by Protein ID:ENSP00000304311
Original member Current member EBI ENST00000393878.5 ENSP00000377456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393878.5Link to Ensembl Protein Viewer:ENSP00000377456.1Re-query CCDS DB by Nucleotide ID:ENST00000393878Re-query CCDS DB by Protein ID:ENSP00000377456
Original member Current member EBI ENST00000409839.7 ENSP00000386630.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409839.7Link to Ensembl Protein Viewer:ENSP00000386630.3Re-query CCDS DB by Nucleotide ID:ENST00000409839Re-query CCDS DB by Protein ID:ENSP00000386630
Original member Current member NCBI NM_002580.3 NP_002571.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002580.3Link to Protein Sequence:NP_002571.1Re-query CCDS DB by Nucleotide ID:NM_002580Re-query CCDS DB by Protein ID:NP_002571Link to BLAST:NP_002571.1
Original member Current member NCBI NM_138937.3 NP_620354.1 Accepted alive Link to Nucleotide Sequence:NM_138937.3Link to Protein Sequence:NP_620354.1Re-query CCDS DB by Nucleotide ID:NM_138937Re-query CCDS DB by Protein ID:NP_620354Link to BLAST:NP_620354.1
Original member Current member NCBI NM_138938.3 NP_620355.1 Accepted alive Link to Nucleotide Sequence:NM_138938.3Link to Protein Sequence:NP_620355.1Re-query CCDS DB by Nucleotide ID:NM_138938Re-query CCDS DB by Protein ID:NP_620355Link to BLAST:NP_620355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002571.1 175 Q06141 175 100% 0 0
NP_620354.1 175 Q06141 175 100% 0 0
NP_620355.1 175 Q06141 175 100% 0 0

Chromosomal Locations for CCDS 1965.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79157226 79157293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79157572 79157698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79158326 79158463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79158651 79158769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79159330 79159405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCTGCCTCCCATGGCCCTGCCCAGTGTATCTTGGATGCTGCTTTCCTGCCTCATGCTGCTGTCTCAGG
TTCAAGGTGAAGAACCCCAGAGGGAACTGCCCTCTGCACGGATCCGCTGTCCCAAAGGCTCCAAGGCCTA
TGGCTCCCACTGCTATGCCTTGTTTTTGTCACCAAAATCCTGGACAGATGCAGATCTGGCCTGCCAGAAG
CGGCCCTCTGGAAACCTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCCTTCGTGTCCTCCCTGGTGAAGA
GCATTGGTAACAGCTACTCATACGTCTGGATTGGGCTCCATGACCCCACACAGGGCACCGAGCCCAATGG
AGAAGGTTGGGAGTGGAGTAGCAGTGATGTGATGAATTACTTTGCATGGGAGAGAAATCCCTCCACCATC
TCAAGCCCCGGCCACTGTGCGAGCCTGTCGAGAAGCACAGCATTTCTGAGGTGGAAAGATTATAACTGTA
ATGTGAGGTTACCCTATGTCTGCAAGTTCACTGACTAG

Translation (175 aa):
MLPPMALPSVSWMLLSCLMLLSQVQGEEPQRELPSARIRCPKGSKAYGSHCYALFLSPKSWTDADLACQK
RPSGNLVSVLSGAEGSFVSSLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMNYFAWERNPSTI
SSPGHCASLSRSTAFLRWKDYNCNVRLPYVCKFTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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