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Report for CCDS15337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15337.1 Public Mus musculus 1 Cfhr1 23 108 98 CCDS HistoryNCBI Gene:50702Re-query CCDS DB by CCDS ID:15337.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023965.7 ENSMUSP00000023965.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023965.7Link to Ensembl Protein Viewer:ENSMUSP00000023965.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023965Re-query CCDS DB by Protein ID:ENSMUSP00000023965
Original member Current member NCBI NM_015780.2 NP_056595.1 Accepted alive Link to Nucleotide Sequence:NM_015780.2Link to Protein Sequence:NP_056595.1Re-query CCDS DB by Nucleotide ID:NM_015780Re-query CCDS DB by Protein ID:NP_056595Link to BLAST:NP_056595.1

Chromosomal Locations for CCDS 15337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 139547700 139547920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139550820 139551002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139553513 139553695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139556332 139556508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139557439 139557633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139560086 139560158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGGGTTCTGTCGCCTGTTGCTCTTAGCTATTGTTCTCCTAACCTCATGGTTCTCTACTGCCAAAGGTG
AAGTGAGCCTTTGTGATTTTCCAAAAATAAGACATGGAATACTATATGATGAAAAGAAAAATGAGCCCTT
TTCCTCTGTTCTTAGTGGGAAGATTTTATACTACTCCTGTGAATATAATTTTGCATCTCCATCAAATTCC
TTCTGGACTCGCATCACTTGCACAGAATCAGGATGGTCACCAACTCCGAAGTGTCTCAGGCTATGCTTCT
TTCCTTTTGTGGAAAATGGTAATTCTACATCTTCAGGTCAAACCCATGTAGAAGGTGACATTGTACAAGT
GGTCTGCAATCAAGGCTACAGCCTTCAGAATAATCAGAGCACCATCACCTGTGCTGAAGAGGGCTGGTCC
ATTACCCCCAAATGCATTTCCACCAATCCAACAGGGAAATGTGGGCCCCCTCCACCTATTGACAATGGAG
ACATCACCTCCTTGTCGTTACCAGTATATGCATCATTATCATCAGTTGAATATCAGTGCCAGAAGTATTA
TCTACTTAAAGGAAATAAGACAATAACATGTAGAAATGGAAAGTGGTCTGAGCCACCAACCTGTATATAT
CCAACAGGGAAATGTGGGCCCCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACTAGAAT
ATGAACCATTATCATCAGTTGAATATCAGTGCCAGAACTATTATGTACTTAAGGGAAAGAAGACAATAAC
ATGTAGAAATGGAAAGTGGTCTGAGCCACCAACCTGTTTATCTGCATGTGTAATATCAGAAGCCATTATG
GAAAGACATAACATACTTCTCAGATGGAGACAAAGCGAAAAGGTTTATATTCAGTCAGGAGAGGATATTG
AGTTTGGATGTAAACCTAGATATAAAAGAGCAAAAGGATCACTGCCATTTCGTACACAGTGCATTAATGG
TCACATCAATTATCCCACTTGTATGTTAAATCACAATACGTTTATTCATTGA

Translation (343 aa):
MGFCRLLLLAIVLLTSWFSTAKGEVSLCDFPKIRHGILYDEKKNEPFSSVLSGKILYYSCEYNFASPSNS
FWTRITCTESGWSPTPKCLRLCFFPFVENGNSTSSGQTHVEGDIVQVVCNQGYSLQNNQSTITCAEEGWS
ITPKCISTNPTGKCGPPPPIDNGDITSLSLPVYASLSSVEYQCQKYYLLKGNKTITCRNGKWSEPPTCIY
PTGKCGPPPPIDNGDITSLSLLEYEPLSSVEYQCQNYYVLKGKKTITCRNGKWSEPPTCLSACVISEAIM
ERHNILLRWRQSEKVYIQSGEDIEFGCKPRYKRAKGSLPFRTQCINGHINYPTCMLNHNTFIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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