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Report for CCDS6926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6926.1 Public Homo sapiens 9 PRRX2 24 110 108 CCDS HistoryNCBI Gene:51450Re-query CCDS DB by CCDS ID:6926.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6926.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372469.6 ENSP00000361547.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372469.6Link to Ensembl Protein Viewer:ENSP00000361547.4Re-query CCDS DB by Nucleotide ID:ENST00000372469Re-query CCDS DB by Protein ID:ENSP00000361547
Original member Current member NCBI NM_016307.4 NP_057391.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016307.4Link to Protein Sequence:NP_057391.1Re-query CCDS DB by Nucleotide ID:NM_016307Re-query CCDS DB by Protein ID:NP_057391Link to BLAST:NP_057391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057391.1 253 Q99811 253 100% 0 0

Chromosomal Locations for CCDS 6926.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 129665868 129666126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129719231 129719418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129720596 129720774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129722217 129722352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGACAGCGCGGCCGCCGCCTTCGCCCTGGACAAGCCGGCGCTGGGCCCGGGGCCGCCGCCGCCTCCAC
CCGCGCTGGGGCCCGGCGACTGCGCCCAGGCGCGCAAGAACTTCTCGGTGAGCCACCTCCTGGACCTGGA
AGAGGTGGCGGCGGCCGGGCGGCTGGCGGCGCGCCCCGGGGCCAGGGCCGAGGCGCGGGAGGGCGCAGCA
CGGGAGCCGTCCGGGGGCAGCAGCGGCAGCGAGGCGGCGCCGCAGGATGGTGAGTGTCCCAGCCCGGGGC
GCGGTAGCGCCGCCAAGCGGAAGAAGAAGCAGCGGCGGAACCGCACCACGTTCAACAGCAGCCAACTGCA
GGCGCTGGAGCGCGTGTTCGAGCGCACGCACTACCCCGACGCCTTTGTGCGCGAGGAGCTTGCCCGGCGC
GTCAACCTCAGCGAGGCGCGCGTTCAGGTCTGGTTTCAGAACCGCCGCGCCAAGTTCCGCAGGAATGAAA
GGGCCATGCTGGCCAGCCGCTCTGCCTCGCTGCTCAAGTCCTACAGCCAGGAGGCCGCCATCGAGCAGCC
CGTGGCTCCCCGGCCCACCGCCCTGAGTCCAGATTATCTCTCCTGGACAGCCTCGTCCCCCTACAGCACA
GTGCCACCCTACAGCCCTGGGAGCTCAGGCCCCGCAACCCCAGGGGTCAACATGGCCAACAGCATCGCCA
GCCTCCGTCTCAAGGCCAAGGAGTTCAGCCTGCACCACAGCCAGGTGCCTACGGTGAACTGA

Translation (253 aa):
MDSAAAAFALDKPALGPGPPPPPPALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPGARAEAREGAA
REPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARR
VNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEAAIEQPVAPRPTALSPDYLSWTASSPYST
VPPYSPGSSGPATPGVNMANSIASLRLKAKEFSLHHSQVPTVN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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