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Report for CCDS20281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20281.1 Public Mus musculus 6 Clec4f 23 108 98 CCDS HistoryNCBI Gene:51811Re-query CCDS DB by CCDS ID:20281.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014686.2 ENSMUSP00000014686.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014686.2Link to Ensembl Protein Viewer:ENSMUSP00000014686.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000014686Re-query CCDS DB by Protein ID:ENSMUSP00000014686
Original member Current member NCBI NM_016751.3 NP_058031.2 Accepted alive Link to Nucleotide Sequence:NM_016751.3Link to Protein Sequence:NP_058031.2Re-query CCDS DB by Nucleotide ID:NM_016751Re-query CCDS DB by Protein ID:NP_058031Link to BLAST:NP_058031.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058031.2 548 P70194 548 99.8175% 0 1

Chromosomal Locations for CCDS 20281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83645211 83645370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83645896 83646014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83646788 83646939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83652359 83653300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83654683 83654763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83655058 83655174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83655957 83656032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGAAGGAGGCCGAGCTGAACAGAGATATGGCTAGATATTGCACAGACAACCAGTGTGTCTCCCTACAGC
CC
CAAGGACTGGGGCCTAAGTCAGCTGCTCTCATGGCTCCCAGGACCCTGCGGCACGTCCAGGTCATTCT
G
GCATTAATGGTGGTGACTGTGATCTTTTCTCTCCTTGCTCTTTTTGTGGTGGCTTCACAGCCTTGGAGA
CCT
GAGTGGAATAAAGAGCCTCCCTCCCTCCTGCTTCGGGGAAGCAACAACTCTGGACACGACAATCATT
CC
CAATTTGTCAGGGAGACAGAAATGCAAGTGGCTATCCAGAGGCTTAGGGACTATGAGGAGAATTCTAG
C
AGCTGTCACAAGGAGGTACAGATACTGAAGTACCAAATGGACAATGTTAGTTCTCTGGTGCAGTTGCTT
GGG
AGCCATCTAGAGGATGTGAATGCTGACATCCTGCAGACAAAAGATGTGCTGAAGGAATCTGGAGCCT
TG
GCTTTGGAGACCCAGGCGCTGAGAAGCTCCTTGGAGGTGGCCAGTGCTGATATCCATAGTCTGAGAGG
A
GATTTGGAAAAGGCAAACGCTATGACTTCCCAGACCCGAGGTCTCTTAAAGAGCAGCACAGAAAACACC
AGT
GCTGAGCTCCACGTGCTGGGCAGAGGCCTGGAGGAAGCCCAGTCTGAGATCCAGGCGTTGAGGGGAA
GT
CTGCAGAGTGCAAATGACCTCAGCTCCCAGACCCAGGGCTTTCTCCAGCACAGTATGGACAACATTAG
T
GCTCAGATCCAGACCGTGAGAGATGGTATGGAAAGGGCTGGTGAAAAGATGAACTCGTTAAAGAAAGAG
CTG
GAAACACTCACTGCTCAGACTCAAAAGGCAAATGGCCACCTGGAGCAGACAGATGCCCAGATCCAGG
GC
TTAAAAGCTGAGCTGAAAAGCACCAGTTCCTTGAACTCCCGGATTGAGGTGGTCAATGGCCAAATGAA
A
GATGCCAGCAGAGAGTTACAGACCCTGAGAAGGGACCTGAGTGATGTCTCAGCTTTGAAGTCCAATGTC
CAG
ATGCTACAGAGCAATCTTCAGAGGGCCAAGACAGAGATGCAGAGTTTGAAGGCAGATCTGCAGGCGA
CC
AAAGCCCTCACTGCCAAGATTCAGGGGGAGCAGAATCGCCTGGGGGCCCTGCAGGAAGCTGTGGCTGC
A
CAGAAGCAGGAGCAGAAGACTCAGAATCAGGTTCTCCAGCTGATCGCGCAGAACTGGAAGTACTTCAAT
GGA
AACTTTTATTACTTTTCTCGTGACAAGAAGCCGTGGCGGGAGGCTGAGAAGTTCTGTACGTCCCAGG
GA
GCGCACCTGGCTTCGGTGACCTCTCAGGAGGAACAGGCATTCCTGGTACAGACTACAAGTTCTGGGGA
C
CATTGGATTGGGCTCACTGACCAGGGCACAGAGGGCATCTGGCGCTGGGTAGATGGGACACCATTCAAC
AAT
GCCCAGAGCAAAGGGTTTTGGGGGAAAAATCAGCCTGACAACTGGAGACATAGGAACGGAGAGCGAG
AA
GACTGTGTTCACGTCCGGCAGCAGTGGAACGACATGGCCTGTGGATCCTCCTACCCCTGGGTGTGCAA
G
AAGTCCACAGGGTGGTCTGCGGCCAGAGTAGGCTAG


Translation (548 aa):
MKEAELNRDMARYCTDNQCVSLQPQGLGPKSAALMAPRTLRHVQVILALMVVTVIFSLLALFVVASQPWR
P
EWNKEPPSLLLRGSNNSGHD
NHSQFVRETEMQVAIQRLRDYEENSSSCHKEVQILKYQMDNVSSLVQLL
G
SHLEDVNADILQTKDVLKESGALALETQALRSSLEVASADIHSLRGDLEKANAMTSQTRGLLKSSTENT
S
AELHVLGRGLEEAQSEIQALRGSLQSANDLSSQTQGFLQHSMDNISAQIQTVRDGMERAGEKMNSLKKE
L
ETLTAQTQKANGHLEQTDAQIQGLKAELKSTSSLNSRIEVVNGQMKDASRELQTLRRDLSDVSALKSNV
Q
MLQSNLQRAKTEMQSLKADLQATKALTAKIQGEQNRLGALQEAVAAQKQEQKTQ
NQVLQLIAQNWKYFN
G
NFYYFSRDKKPWREAEKFCTSQGAHLASVTSQEEQ
AFLVQTTSSGDHWIGLTDQGTEGIWRWVDGTPFN
N
AQSK
GFWGKNQPDNWRHRNGEREDCVHVRQQWNDMACGSSYPWVCKKSTGWSAARVG



Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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