CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS36997.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
36997.1 |
Public |
Mus musculus |
14 |
Pibf1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:52023](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:36997.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 36997.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000022650.8 |
ENSMUSP00000022650.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000022650.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000022650.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000022650](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000022650](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_029320.3 |
NP_083596.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_029320.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083596.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_029320](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083596](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_029320.4 |
NP_083596.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_029320.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083596.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_029320](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083596](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_083596.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 36997.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2271 nt): ATGTCTCGCAAAATTGCCAAGGAACCAAAAAAAGTAAATATCTCTAGTTCTCTGGAGTCTGAAGATATTA GTTTGGAAACAACCATTCATACAGATGATGTCTCATCATCAGAGGAGCGAGAAGGTAAAGTCAAAATCAC CAGGCAGTTAATCGAAAGAAAAGAGATACTTCATAATATTCAGTTACTGAAAATCGAGCTATCCCAGAAA AACATGATGATCGACAACTTGAAAATGGATTATCTTACAAAGATTGAGGAGCTAGAGGAAAAACTTAATG ACGCCCTTCACCAGAAGCAGCTGCTAACTTTGCGATTAGACAATCAGTTGACTATTCAACAGAAAGATGC CAAAAAATATCAAGAACTAATGAAACAAGAAATGGAAACCATTTTATTGCGACAGAAGCAACTGGAAGAA ACAAACCATCAGCTGAGAGAAAAGGCTGGAGATGTTCGCCGAAATCTGCGAGACTTTGAGCTGACAGAAG AGCAGTATGTGAAGCTAAAATCTTTTCCTGAAGATCAACTCTCTATTCCTGAATATGTATCTATTCGCTT CTATGAGCTCGTGAACCCATTAAGAAAGGAAGTCTGTGAGCTACAGGTGAAGAAGAGTGAACTCTCTGAA GAACTGAGTACAAGTAAAGGCCAACTGAAGCAGCTGACGGAGACATATGAAGAAGATCGAAGAAACAACG CTGAACTTCTAATTCGATGTCAACGTTTGACCTTAGAATTAGCAGACACAAAACAGTTAGTTCAGCAAGG TGATTACCGTCAAGAGAACTATGACAAAGTGAAGAGTGAACGCGATGCTCTGGAACAGGACGTACTCGAG CTTAGAAGAAAACACGAAGTACTTGAAGCCTCTCACATAGCTCAAGCTAAGGAAAGGAATGAATTATCAA AGGAGGTCAGCAGCCTGCAGCAGACAGTCACCCTGCTGCAGAAGGATAAAGACTACCTCAATCGCCAAAA CATGGAACTCAGTGTACGCTGTGCCCATGAGGAGGATCGGCTGGAAAGGCTGCAAGTTCAACTGGAAGAC ACCAAAAAGGCTAGAGAAGAGATGTATGAGAAATATGTCACGTCCAGAGACCATTATAAAACAGAATATG AAAATAAACTACATGATGAACTGGAACAAATCAAATTGAAAACTAATCTAGAAATTGATCAGCTTCGAAG TGCCTCTAGGGAAATGTATGAACGAGAAAACAGAAATCTCCGTGAAGCAAGGGATAATGCACTCGCTGAA AAGAACCGAGCAGTGGCAGCGGAAAAGGACGCTCTGGGAAAGCATGAGCAGCTCCTAGACAGGTACAGAG AACTCCAGCTCAGTACAGAGAGCAAGGTATCTGAGTTTCTCCATCAGAGCAAGTTGAAGTCCTTTGAAAG TGAGCGTGTTCAACTCCTGCAAGAGGAAACTGCAAGAAATCTCACGCAGTGCCAGTTGGAGTGTGAAAAA TATCAGAAGAAATTGGAGGTTTTAACTAAAGAATTTTATAGTCTCCAAACTTCTTCTGAAAAACGCATTA CCGAACTCGAGGCACAGAACTCAGAGCATCAGGCAAGGTTAGACATTTACGAGAAGTTGGAAAAGGAGCT TGATGAGATAATAATGCAAACAGCAGAAATTGAAAATGAAGATGAGGCTGAAAGAATTCTTTATTCCTAT GGTTATGGTGCTAATGTTCCCACAACAGCTAAAAGACGACTAAAGCAAAGTGTCCACTTGGCAAGAAGAG TTCTTCAGTTAGAAAAACAAAATTCATTAATTTTAAAAGATCTGGACCATCAAAAGAACCAAGTAAGACA GCTTTCACAAGAGCTTGACAGAGCCAATTCACTGTTGAATCAGACTCAGCAGCCCTACAGATACCTCATA GAGTCTGTGCGACAGAGAGATGCCAAGATTGACTCACTGATGAAGTCTACAGCTCAACTTGAGAAAGATG TCAGCAACTTAAATAAAGAGAAGTCAGCCCTGCTGCAGACGAAGAACCAGATGGCACTGGATCTGGAGCA GCTCCTCAGTCACCGCGAGGAATTTGCAGCTATGAAGCAGATCATCATTAATATGTGTAGTAAACATTCT GAGAACAACTTATTTCTTACGAAAATGGAATCAAAAAGTGTGACAGAAAATCAAGCAAAGACTTTGAATA TGCCAAGAGAACATGAAGAGAATATATTTATACCCAAGCCAACGCTCTTTACTAAAAAGGAAGCACAAGA GTGGCCCAAGAGTCAGAAGATGAAGACCTAG
Translation (756 aa): MSRKIAKEPKKVNISSSLESEDISLETTIHTDDVSSSEEREGKVKITRQLIERKEILHNIQLLKIELSQK NMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMETILLRQKQLEE TNHQLREKAGDVRRNLRDFELTEEQYVKLKSFPEDQLSIPEYVSIRFYELVNPLRKEVCELQVKKSELSE ELSTSKGQLKQLTETYEEDRRNNAELLIRCQRLTLELADTKQLVQQGDYRQENYDKVKSERDALEQDVLE LRRKHEVLEASHIAQAKERNELSKEVSSLQQTVTLLQKDKDYLNRQNMELSVRCAHEEDRLERLQVQLED TKKAREEMYEKYVTSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAE KNRAVAAEKDALGKHEQLLDRYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLTQCQLECEK YQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSY GYGANVPTTAKRRLKQSVHLARRVLQLEKQNSLILKDLDHQKNQVRQLSQELDRANSLLNQTQQPYRYLI ESVRQRDAKIDSLMKSTAQLEKDVSNLNKEKSALLQTKNQMALDLEQLLSHREEFAAMKQIIINMCSKHS ENNLFLTKMESKSVTENQAKTLNMPREHEENIFIPKPTLFTKKEAQEWPKSQKMKT
|