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Report for CCDS36997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36997.1 Public Mus musculus 14 Pibf1 23 108 98 CCDS HistoryNCBI Gene:52023Re-query CCDS DB by CCDS ID:36997.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022650.8 ENSMUSP00000022650.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022650.8Link to Ensembl Protein Viewer:ENSMUSP00000022650.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022650Re-query CCDS DB by Protein ID:ENSMUSP00000022650
Original member NCBI NM_029320.3 NP_083596.2 Updated not alive Link to Nucleotide Sequence:NM_029320.3Link to Protein Sequence:NP_083596.2Re-query CCDS DB by Nucleotide ID:NM_029320Re-query CCDS DB by Protein ID:NP_083596
Current member NCBI NM_029320.4 NP_083596.2 Accepted alive Link to Nucleotide Sequence:NM_029320.4Link to Protein Sequence:NP_083596.2Re-query CCDS DB by Nucleotide ID:NM_029320Re-query CCDS DB by Protein ID:NP_083596Link to BLAST:NP_083596.2

Chromosomal Locations for CCDS 36997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99101050 99101301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99105169 99105269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99107299 99107497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99112970 99113089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99133236 99133369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99136453 99136561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99137042 99137223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99140537 99140662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99150643 99150741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99179315 99179480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99186481 99186631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99187718 99187808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99196349 99196451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99210940 99211070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99221559 99221643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99242839 99243009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99254161 99254211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGTCTCGCAAAATTGCCAAGGAACCAAAAAAAGTAAATATCTCTAGTTCTCTGGAGTCTGAAGATATTA
GT
TTGGAAACAACCATTCATACAGATGATGTCTCATCATCAGAGGAGCGAGAAGGTAAAGTCAAAATCAC
C
AGGCAGTTAATCGAAAGAAAAGAGATACTTCATAATATTCAGTTACTGAAAATCGAGCTATCCCAGAAA
AAC
ATGATGATCGACAACTTGAAAATGGATTATCTTACAAAGATTGAGGAGCTAGAGGAAAAACTTAATG
AC
GCCCTTCACCAGAAGCAGCTGCTAACTTTGCGATTAGACAATCAGTTGACTATTCAACAGAAAGATGC
C
AAAAAATATCAAGAACTAATGAAACAAGAAATGGAAACCATTTTATTGCGACAGAAGCAACTGGAAGAA
ACA
AACCATCAGCTGAGAGAAAAGGCTGGAGATGTTCGCCGAAATCTGCGAGACTTTGAGCTGACAGAAG
AG
CAGTATGTGAAGCTAAAATCTTTTCCTGAAGATCAACTCTCTATTCCTGAATATGTATCTATTCGCTT
C
TATGAGCTCGTGAACCCATTAAGAAAGGAAGTCTGTGAGCTACAGGTGAAGAAGAGTGAACTCTCTGAA
GAA
CTGAGTACAAGTAAAGGCCAACTGAAGCAGCTGACGGAGACATATGAAGAAGATCGAAGAAACAACG
CT
GAACTTCTAATTCGATGTCAACGTTTGACCTTAGAATTAGCAGACACAAAACAGTTAGTTCAGCAAGG
T
GATTACCGTCAAGAGAACTATGACAAAGTGAAGAGTGAACGCGATGCTCTGGAACAGGACGTACTCGAG
CTT
AGAAGAAAACACGAAGTACTTGAAGCCTCTCACATAGCTCAAGCTAAGGAAAGGAATGAATTATCAA
AG
GAGGTCAGCAGCCTGCAGCAGACAGTCACCCTGCTGCAGAAGGATAAAGACTACCTCAATCGCCAAAA
C
ATGGAACTCAGTGTACGCTGTGCCCATGAGGAGGATCGGCTGGAAAGGCTGCAAGTTCAACTGGAAGAC
ACC
AAAAAGGCTAGAGAAGAGATGTATGAGAAATATGTCACGTCCAGAGACCATTATAAAACAGAATATG
AA
AATAAACTACATGATGAACTGGAACAAATCAAATTGAAAACTAATCTAGAAATTGATCAGCTTCGAAG
T
GCCTCTAGGGAAATGTATGAACGAGAAAACAGAAATCTCCGTGAAGCAAGGGATAATGCACTCGCTGAA
AAG
AACCGAGCAGTGGCAGCGGAAAAGGACGCTCTGGGAAAGCATGAGCAGCTCCTAGACAGGTACAGAG
AA
CTCCAGCTCAGTACAGAGAGCAAGGTATCTGAGTTTCTCCATCAGAGCAAGTTGAAGTCCTTTGAAAG
T
GAGCGTGTTCAACTCCTGCAAGAGGAAACTGCAAGAAATCTCACGCAGTGCCAGTTGGAGTGTGAAAAA
TAT
CAGAAGAAATTGGAGGTTTTAACTAAAGAATTTTATAGTCTCCAAACTTCTTCTGAAAAACGCATTA
CC
GAACTCGAGGCACAGAACTCAGAGCATCAGGCAAGGTTAGACATTTACGAGAAGTTGGAAAAGGAGCT
T
GATGAGATAATAATGCAAACAGCAGAAATTGAAAATGAAGATGAGGCTGAAAGAATTCTTTATTCCTAT
GGT
TATGGTGCTAATGTTCCCACAACAGCTAAAAGACGACTAAAGCAAAGTGTCCACTTGGCAAGAAGAG
TT
CTTCAGTTAGAAAAACAAAATTCATTAATTTTAAAAGATCTGGACCATCAAAAGAACCAAGTAAGACA
G
CTTTCACAAGAGCTTGACAGAGCCAATTCACTGTTGAATCAGACTCAGCAGCCCTACAGATACCTCATA
GAG
TCTGTGCGACAGAGAGATGCCAAGATTGACTCACTGATGAAGTCTACAGCTCAACTTGAGAAAGATG
TC
AGCAACTTAAATAAAGAGAAGTCAGCCCTGCTGCAGACGAAGAACCAGATGGCACTGGATCTGGAGCA
G
CTCCTCAGTCACCGCGAGGAATTTGCAGCTATGAAGCAGATCATCATTAATATGTGTAGTAAACATTCT
GAG
AACAACTTATTTCTTACGAAAATGGAATCAAAAAGTGTGACAGAAAATCAAGCAAAGACTTTGAATA
TG
CCAAGAGAACATGAAGAGAATATATTTATACCCAAGCCAACGCTCTTTACTAAAAAGGAAGCACAAGA
G
TGGCCCAAGAGTCAGAAGATGAAGACCTAG


Translation (756 aa):
MSRKIAKEPKKVNISSSLESEDISLETTIHTDDVSSSEEREGKVKITRQLIERKEILHNIQLLKIELSQK
N
MMIDNLKMDYLTK
IEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMETILLRQKQLEE
T
NHQLREKAGDVRRNLRDFELTEEQYVKLKSFPEDQLSIPEYVS
IRFYELVNPLRKEVCELQVKKSELSE
E
LSTSKGQLKQLTE
TYEEDRRNNAELLIRCQRLTLELADTKQLVQQGDYRQENYDKVKSERDALEQDVLE
L
RRKHEVLEASHIAQAKERNELSKE
VSSLQQTVTLLQKDKDYLNRQNMELSVRCAHEEDRLERLQVQLED
T
KKAREEMYEKYVTS
RDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAE
K
NRAVAAEKDALGKHEQLLD
RYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLTQCQLECEK
Y
QKKLE
VLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSY
G
YGANVPTTAKRRLKQ
SVHLARRVLQLEKQNSLILKDLDHQKNQVRQLSQELDRANSLLNQTQQPYRYLI
E
SVRQRDAKIDSLMKSTAQLEKDV
SNLNKEKSALLQTKNQMALDLEQLLSHREEFAAMKQIIINMCSKHS
E
NNLFLTKMESKSVTENQAKTLNMPREHEENIFIPKPTLF
TKKEAQEWPKSQKMKT



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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