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Report for CCDS21148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21148.1 Public Mus musculus 7 Rhpn2 23 108 98 CCDS HistoryNCBI Gene:52428Re-query CCDS DB by CCDS ID:21148.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032705.12 ENSMUSP00000032705.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032705.12Link to Ensembl Protein Viewer:ENSMUSP00000032705.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032705Re-query CCDS DB by Protein ID:ENSMUSP00000032705
Original member Current member EBI ENSMUST00000085556.3 ENSMUSP00000082692.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085556.3Link to Ensembl Protein Viewer:ENSMUSP00000082692.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085556Re-query CCDS DB by Protein ID:ENSMUSP00000082692
Original member Current member NCBI NM_027897.4 NP_082173.3 Accepted alive Link to Nucleotide Sequence:NM_027897.4Link to Protein Sequence:NP_082173.3Re-query CCDS DB by Nucleotide ID:NM_027897Re-query CCDS DB by Protein ID:NP_082173Link to BLAST:NP_082173.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082173.3 686 Q8BWR8 686 100% 0 0

Chromosomal Locations for CCDS 21148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35334343 35334411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35353732 35353847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35360980 35361108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35363617 35363692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35370709 35370786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35371115 35371239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35372305 35372471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35376160 35376347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35376974 35377130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35379565 35379684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35381337 35381531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35383969 35384045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35384638 35384784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35385327 35385482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35390755 35391015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGACCGATACGCTGCTACCCGCGGCTCCCCAGCCGCTGGAGAAAGAGGGTGACGACTACTTTCGAAAGG
GTTGTAATCCCCTTGCACAAACTGGCCGGAGCAAGCTGCAGAATCAAAGGGCTGCCTTGAACCAGCAGAT
CCTGAAGGCTGTGCGGATGCGGACAGGAGCCGAGAACCTTCTGAAGGTCGCCACAAACCAGAAGGTGCGG
GAACAGGTTCGCCTGGAGCTGAGCTTTGTCAACTCAGACCTGCAGATGCTGAAGGAGGAGCTGGAGGGGC
TCAACATCTCCGTGGGAGTGTACCAGGGCACCGAGGAAGCGTTCACCATTCCTCTGATTCCTCTCGGCCT
GAAGGAGACCAAAGAAGTTGACTTTTCCATCGTCTTCAAGGATTTTATTTTGGAACACTACAGTGAAGAT
AGCTATTTGTATGAGGATGACATTGCAGACCTTATGGACCTGCGACAGGCCTGTCGAACACCCAGCAGGG
ATGAGGCGGGGGTCGAACTGCTCATGTCGTACTTCATTCAGCTGGGCTTTGTGGAGAGCAGGTTCTTCCC
ACCCACGCGTCACATGGGGCTCCTGTTTACCTGGTATGACTCCTTCACTGGGGTTCCGGTCAGCCAGCAG
ACTTTGCTGTTGGAGAAGGCCAGCGTTCTCTTCAACATTGGGGCGCTCTACACCCAGATCGGGACCCGCT
GTAACCGGCAGACGCAGGCTGGCTTAGAGAGCGCTGTGGATGCCTTTCAAAGAGCTGCAGGGGTTTTAAA
CTACCTGAAAGAGACCTTCACTCACACTCCAAGTTACGACATGAGCCCTGCCATGCTCAGTGTGCTGGTC
AAAATGATGCTCGCCCAAGCCCAAGAAAGTGTGTTTGAGAAAGTCTGCCTCCCGGGGATCCAGAACGAGT
TCTTCGTGCTGGTAAAGGTGGCTCAGGAGGCTGCCAAGGTGGCAGAGGCCTACCGGCAGCTGCATGCGGC
CATGAGCCAGGAACCAGTGAAAGAGAACATCCCGTATTCGTGGGCCAGTGTGGCCTATGTGAAGGCCTAC
CACTATGGGGCCCTGGCTCACTACTTTGCGGCCACCCTCCTCATCGACCACCAGCTAAAGCCAGGCGCAG
ACGAGGACCACCAAGAGAAGTGTCTGTCCCAGCTCTATGACCGCATGCCAGAAGGGATGACGCCGCTGGC
CACGCTGAAGAATGCTGGGCAGCGTGTGCTGCTGGGTAAAGGACATCTGCACCGGGCCATTGGTTTTCAC
GAGGAGTCACTGAGGGAGGCCAACCTGTGCAAGAAGCTGCGTGACATTCAGGTGCTCCGGGATGTGCTGT
CTGCTGCCCATCAGCGCACTCAGCTCAAGCACACCCAGCACCGAGAGGATGACGACCTTCTGAACCTGAT
TGACGCTCCAGATGTCCTTCCAAAAACTGAGCGAGAGGTCAAAATAACCTTCCCCGACTTTTCCAAAGTG
ACAGTGACAGACTTCTTCCAGAAGCTGGGTCCCCTGTCTGTGTTTTCGGCCAGCAAGAGATGGTCACCTC
CTCGGGGCATTCACTTCACAGTGGAGGAAGGGGACTTGGGGTTCACCTTACGAGGGAACACCCCAGTCCA
GGTACACTTCCTGGATCCTCACTGCTCTGCTTCGCTTGCAGGGGCCAAGGAAGGAGATTACATTGTTTCC
ATTCAAGGCGTGGATTGCAAGTGGCTGACAGTGAGTGAGGTTATGAAGTTGCTGAAGAGCTTTGGGGGAG
AAGAGGTTGAGATGAAGGTCGTGAGCCTCCTGGACTCCACATCGTCCATGCATAATAAGTGTGCCACTTA
CTCTGTGGGGATGCAGAAAACTTACTCCATGATATGCCTGTCCATGGACGATGATGACAAAGCTGACAAA
ACCAAGAAGATCTCAAAAAAGCTCTCCTTCTTGAGTTGGGGCACTAGTAAAAACAGACAGAAGTCGGCCA
GCACGCTGTGCCTCCCCGAGGTTGGCCTGGCGAGGTCGCAAAACAAGAAGAAACTCCCGACTCCCTTCAG
CCTGCTCAACTCTGACAGCTCTCTGTACTGA

Translation (686 aa):
MTDTLLPAAPQPLEKEGDDYFRKGCNPLAQTGRSKLQNQRAALNQQILKAVRMRTGAENLLKVATNQKVR
EQVRLELSFVNSDLQMLKEELEGLNISVGVYQGTEEAFTIPLIPLGLKETKEVDFSIVFKDFILEHYSED
SYLYEDDIADLMDLRQACRTPSRDEAGVELLMSYFIQLGFVESRFFPPTRHMGLLFTWYDSFTGVPVSQQ
TLLLEKASVLFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKETFTHTPSYDMSPAMLSVLV
KMMLAQAQESVFEKVCLPGIQNEFFVLVKVAQEAAKVAEAYRQLHAAMSQEPVKENIPYSWASVAYVKAY
HYGALAHYFAATLLIDHQLKPGADEDHQEKCLSQLYDRMPEGMTPLATLKNAGQRVLLGKGHLHRAIGFH
EESLREANLCKKLRDIQVLRDVLSAAHQRTQLKHTQHREDDDLLNLIDAPDVLPKTEREVKITFPDFSKV
TVTDFFQKLGPLSVFSASKRWSPPRGIHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVS
IQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKCATYSVGMQKTYSMICLSMDDDDKADK
TKKISKKLSFLSWGTSKNRQKSASTLCLPEVGLARSQNKKKLPTPFSLLNSDSSLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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