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Report for CCDS29325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29325.1 Public Mus musculus 18 Ldlrad4 23 108 98 CCDS HistoryNCBI Gene:52662Re-query CCDS DB by CCDS ID:29325.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063775.4 ENSMUSP00000068471.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063775.4Link to Ensembl Protein Viewer:ENSMUSP00000068471.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063775Re-query CCDS DB by Protein ID:ENSMUSP00000068471
Original member Current member NCBI NM_172631.4 NP_766219.2 Accepted alive Link to Nucleotide Sequence:NM_172631.4Link to Protein Sequence:NP_766219.2Re-query CCDS DB by Nucleotide ID:NM_172631Re-query CCDS DB by Protein ID:NP_766219Link to BLAST:NP_766219.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766219.2 306 Q8BWJ4 306 100% 0 0

Chromosomal Locations for CCDS 29325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 68064647 68064686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68106551 68106691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68235655 68235809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68250571 68250624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68254009 68254539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGCCGGAAGCTGGTTTTCAGGCCACAAATGCGTTCACAGAGTGCAAATTCACCTGCACCAGCGGTAAAT
GCTTGTATCTTGGTTCTCTGGTCTGTAACCAACAGAACGACTGTGGGGACAACAGTGACGAAGAGAACTG
CCTCCTGGTGACCGAGCACCCACCGCCGGGCATCTTCAACTCCGAGCTGGAATTCGCGCAGATCCTTATC
ATTGTTGTGGTGGTGACGGTGATGGTGGTGGTCGTTGTCTGCCTACTGAACCACTACAAAGTCTCCACAC
GCTCCTTCATCAACCGCCCCAACCAGAGCCAGAGACAGGAGGACGGGCTGCAGCCGGAAGGATCCCTGTG
GCCTTCTGATAGCTCCGTGCAGCGCCCAGGGGCTTCAGAGATCATGTGTGCCCCACGGGGCAGGGATAGG
TTTACTACCCCATCTTTCATCCAGAGGGATCCATTCAGTCGTTTCCAGCCCACCTACCCCTATGTGCAGC
ACGAGATTGACTTGCCTCCCACCATCTCCCTGTCAGACGGGGAGGAGCCGCCTCCTTACCAAGGACCCTG
CACGCTACAGCTCCGGGACCCAGAGCAGCAGATGGAACTCAACCGAGAGTCCGTGAGGGCCCCGCCCAAT
CGAACCGTTTTTGACAGTGACTTGATAGACATTTCTATGTACAACGGGGGACCATGCCCACCAAGCAGCC
ACTCGGGCATCAGCGCAGCTACCTGTAGCAGTAACGGAAGAATGGAGGGGCCACCCCCGACCTACAGCGA
GGTGATGGGCCACTACCCAGGCACCTCGTTCTTCCATCACCAGCACAGCAACACACACAGGGGCAGCAGA
CCACAGTTTCAGCCGAACAACTCAGAGGGCACAATAGTACCCATCAAGGGCAAAGACAGGAAGCCGGGGG
ACCTGGTCTGA

Translation (306 aa):
MPEAGFQATNAFTECKFTCTSGKCLYLGSLVCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQILI
IVVVVTVMVVVVVCLLNHYKVSTRSFINRPNQSQRQEDGLQPEGSLWPSDSSVQRPGASEIMCAPRGRDR
FTTPSFIQRDPFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPN
RTVFDSDLIDISMYNGGPCPPSSHSGISAATCSSNGRMEGPPPTYSEVMGHYPGTSFFHHQHSNTHRGSR
PQFQPNNSEGTIVPIKGKDRKPGDLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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