NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42528.1 Public Homo sapiens 19 TM6SF2 24 110 108 CCDS HistoryNCBI Gene:53345Re-query CCDS DB by CCDS ID:42528.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389363.5 ENSP00000374014.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389363.5Link to Ensembl Protein Viewer:ENSP00000374014.2Re-query CCDS DB by Nucleotide ID:ENST00000389363Re-query CCDS DB by Protein ID:ENSP00000374014
Original member Current member NCBI NM_001001524.3 NP_001001524.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001524.3Link to Protein Sequence:NP_001001524.2Re-query CCDS DB by Nucleotide ID:NM_001001524Re-query CCDS DB by Protein ID:NP_001001524Link to BLAST:NP_001001524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001524.2 377 Q9BZW4-1 377 100% 0 0

Chromosomal Locations for CCDS 42528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19264664 19264873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19266490 19266609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19267621 19267713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19267986 19268087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19268630 19268754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19269687 19269769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19270173 19270276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19270345 19270442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19271022 19271125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19273121 19273215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGACATCCCGCCGCTGGCCGGCAAGATCGCGGCGCTGTCGCTGAGCGCCCTCCCGGTGTCCTACGCGC
TC
AACCACGTCTCGGCGCTCTCGCACCCCCTGTGGGTGGCATTGATGAGCGCCCTAATCCTGGGTCTGCT
T
TTCGTGGCGGTCTACAGCTTGTCCCATGGCGAGGTCTCCTATGACCCACTCTATGCTGTCTTCGCTGTC
TTC
GCCTTCACCTCGGTTGTGGACCTCATCATCGCTCTTCAGGAAGACAGCTATGTGGTGGGCTTCATGG
AG
TTCTACACCAAGGAGGGAGAGCCATACCTGCGCACAGCGCACGGAGTCTTCATCTGCTACTGGGATGG
C
ACTGTTCACTACCTCCTCTACCTGGCCATGGCCGGCGCCATCTGCAGAAGGAAGAGATACCGGAATTTT
GGA
CTCTACTGGCTGGGTTCCTTCGCCATGAGCATCCTGGTGTTCCTTACAGGAAACATTCTTGGCAAAT
AC
AGCTCCGAGATCAGGCCTGCCTTCTTCCTCACCATCCCCTACCTGCTGGTGCCATGCTGGGCTGGCAT
G
AAGGTCTTCAGCCAGCCCCGGGCGCTAACCCGCTGCACCGCCAACATGGTGCAAGAGGAACAAAGAAAG
GGA
CTCCTGCAGCGTCCGGCTGACCTGGCCCTTGTCATATATCTCATCCTTGCTGGCTTCTTCACTCTGT
TC
CGGGGCCTGGTGGTGCTTGATTGCCCCACAGATGCCTGCTTTGTCTATATCTACCAGTATGAGCCATA
C
CTGCGGGACCCTGTGGCCTACCCTAAGGTGCAGATGCTGATGTACATGTTTTATGTCCTGCCTTTCTGC
GGC
CTGGCTGCCTATGCTCTCACCTTCCCTGGTTGCTCCTGGCTTCCAGACTGGGCCTTGGTGTTTGCTG
GA
GGCATCGGCCAGGCACAGTTCTCGCACATGGGGGCTTCCATGCACCTGCGCACACCCTTCACCTACCG
T
GTGCCTGAGGACACCTGGGGCTGCTTCTTCGTGTGCAATCTGCTGTATGCGCTGGGCCCCCACCTGCTG
GCC
TACCGTTGCCTTCAGTGGCCCGCATTCTTCCACCAGCCACCACCCTCCGACCCCCTAGCCCTCCACA
AG
AAGCAGCATTGA


Translation (377 aa):
MDIPPLAGKIAALSLSALPVSYALNHVSALSHPLWVALMSALILGLLFVAVYSLSHGEVSYDPLYAVFAV
F
AFTSVVDLIIALQEDSYVVGFMEFYTKE
GEPYLRTAHGVFICYWDGTVHYLLYLAMAGAICRRKRYRNF
G
LYWLGSFAMSILVFLTGNIL
GKYSSEIRPAFFLTIPYLLVPCWAGMKVFSQPRALTRCTANMVQEEQRK
G
LLQRPADLALVIYLILAGFFTLFRGL
VVLDCPTDACFVYIYQYEPYLRDPVAYPKVQMLMYMFYVLPFC
G
LAAYALTFPGCSWLPDWALVFAGGIGQ
AQFSHMGASMHLRTPFTYRVPEDTWGCFFVCNLLYALGPHLL
A
YRCLQWPAFFHQPPPSDPLALHKKQH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser