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Report for CCDS24405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24405.1 Public Mus musculus 11 Polm 23 108 98 CCDS HistoryNCBI Gene:54125Re-query CCDS DB by CCDS ID:24405.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020767.3 ENSMUSP00000020767.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020767.3Link to Ensembl Protein Viewer:ENSMUSP00000020767.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020767Re-query CCDS DB by Protein ID:ENSMUSP00000020767
Original member Current member NCBI NM_017401.2 NP_059097.2 Accepted alive Link to Nucleotide Sequence:NM_017401.2Link to Protein Sequence:NP_059097.2Re-query CCDS DB by Nucleotide ID:NM_017401Re-query CCDS DB by Protein ID:NP_059097Link to BLAST:NP_059097.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059097.2 496 Q9JIW4 496 100% 0 0

Chromosomal Locations for CCDS 24405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5829029 5829115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5829311 5829394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5829477 5829725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5829826 5829928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5830068 5830200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5831660 5831780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5834742 5834813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5835416 5835586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5835701 5835799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5836194 5836374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5837561 5837751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGCTTCCGAAGCGACGGCGAGTGCGAGCTGGGTCCCCACACAGCGCGGTAGCCTCTTCCACGCCGCCCT
CGGTGGTGCGCTTCCCGGATGTGGCCATCTACCTTGCGGAGCCGCGAATGGGCCGCAGCCGCCGGGCCTT
CCTCACCCGCCTGGCGCGGTCCAAAGGCTTCCGCGTCCTAGATGCTTACAGCTCAAAGGTGACACATGTG
GTGATGGAAGGGACCTCAGCCAAGGAGGCCATCTGCTGGCAGAAGAACATGGATGCTCTCCCCACAGGCT
GCCCACAGCCAGCTCTGCTAGATATTAGCTGGTTTACAGAAAGCATGGCAGCTGGGCAGCCTGTCCCTGA
GGAGGGCCGGCACCACCTGGAGGTAGCTGAGCCCAGGAAGGAGCCCCCAGTCTCAGCGTCGATGCCAGCT
TATGCCTGTCAGCGCCCCTCACCTCTCACACACCATAACACTCTCCTCTCAGAGGCTCTGGAGACGCTAG
CGGAGGCAGCGGGCTTCGAAGCCAACGAGGGCCGTCTTCTCTCCTTCTCCAGAGCGGCCTCGGTGCTCAA
GTCCCTGCCCTGCCCTGTTGCATCTTTGAGCCAGCTGCATGGGCTGCCCTACTTTGGAGAACATTCCACT
AGAGTAATCCAGGAGCTGCTGGAGCATGGAACATGTGAAGAAGTGAAACAAGTCCGTTGCTCAGAAAGGT
ACCAGACCATGAAGCTCTTCACCCAGGTCTTCGGGGTTGGGGTGAAGACTGCCAACCGGTGGTACCAGGA
AGGACTACGAACCCTGGATGAGCTCAGAGAGCAGCCCCAGAGACTGACACAGCAGCAGAAAGCAGGGCTC
CAATATTACCAGGACCTGAGCACTCCAGTTAGGCGAGCTGATGCCGAGGCTCTGCAGCAGTTGATAGAGG
CAGCTGTGAGACAGACCCTGCCCGGAGCCACTGTCACACTGACTGGCGGTTTCCGAAGGGGGAAGTTACA
AGGCCATGATGTAGACTTCCTTATCACCCACCCAGAGGAGGGGCAAGAAGTAGGGCTGCTGCCCAAAGTG
ATGAGCTGCCTACAGAGCCAGGGACTCGTCCTGTATCACCAGTACCACCGCAGCCATTTGGCAGACTCAG
CCCACAACCTGCGGCAGCGGAGCTCCACCATGGATGCTTTTGAGAGGAGTTTCTGCATCTTGGGTTTGCC
ACAACCCCAACAGGCAGCTTTAGCGGGGGCCCTGCCTCCCTGCCCAACTTGGAAAGCTGTGAGGGTAGAT
CTTGTGGTCACGCCCAGCAGCCAGTTCCCCTTTGCCCTTCTGGGCTGGACTGGCTCCCAGTTCTTTGAGC
GGGAGCTACGGCGGTTCAGCCGTCAAGAGAAGGGGCTGTGGCTTAACAGCCATGGGCTGTTTGATCCTGA
GCAGAAGAGAGTTTTCCATGCAACTTCTGAGGAAGATGTTTTCAGACTCCTGGGCCTCAAGTACCTTCCT
CCAGAGCAGAGAAATGCCTGA

Translation (496 aa):
MLPKRRRVRAGSPHSAVASSTPPSVVRFPDVAIYLAEPRMGRSRRAFLTRLARSKGFRVLDAYSSKVTHV
VMEGTSAKEAICWQKNMDALPTGCPQPALLDISWFTESMAAGQPVPEEGRHHLEVAEPRKEPPVSASMPA
YACQRPSPLTHHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHST
RVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGL
QYYQDLSTPVRRADAEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKV
MSCLQSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTWKAVRVD
LVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDPEQKRVFHATSEEDVFRLLGLKYLP
PEQRNA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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