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Report for CCDS14994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14994.1 Public Mus musculus 1 Icos 23 108 98 CCDS HistoryNCBI Gene:54167Re-query CCDS DB by CCDS ID:14994.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102827.3 ENSMUSP00000099891.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102827.3Link to Ensembl Protein Viewer:ENSMUSP00000099891.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102827Re-query CCDS DB by Protein ID:ENSMUSP00000099891
Original member Current member NCBI NM_017480.2 NP_059508.2 Accepted alive Link to Nucleotide Sequence:NM_017480.2Link to Protein Sequence:NP_059508.2Re-query CCDS DB by Nucleotide ID:NM_017480Re-query CCDS DB by Protein ID:NP_059508Link to BLAST:NP_059508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059508.2 200 Q9WVS0 200 100% 0 0

Chromosomal Locations for CCDS 14994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 60977959 60978016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60993702 60994040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60994610 60994716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60995524 60995608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60997701 60997714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGAAGCCGTACTTCTGCCGTGTCTTTGTCTTCTGCTTCCTAATCAGACTTTTAACAGGAGAAATCAATG
GCTCGGCCGATCATAGGATGTTTTCATTTCACAATGGAGGTGTACAGATTTCTTGTAAATACCCTGAGAC
TGTCCAGCAGTTAAAAATGCGATTGTTCAGAGAGAGAGAAGTCCTCTGCGAACTCACCAAGACCAAGGGA
AGCGGAAATGCGGTGTCCATCAAGAATCCAATGCTCTGTCTATATCATCTGTCAAACAACAGCGTCTCTT
TTTTCCTAAACAACCCAGACAGCTCCCAGGGAAGCTATTACTTCTGCAGCCTGTCCATTTTTGACCCACC
TCCTTTTCAAGAAAGGAACCTTAGTGGAGGATATTTGCATATTTATGAATCCCAGCTCTGCTGCCAGCTG
AAGCTCTGGCTACCCGTAGGGTGTGCAGCTTTCGTTGTGGTACTCCTTTTTGGATGCATACTTATCATCT
GGTTTTCAAAAAAGAAATACGGATCCAGTGTGCATGACCCTAATAGTGAATACATGTTCATGGCGGCAGT
CAACACAAACAAAAAGTCTAGACTTGCAGGTGTGACCTCATAA

Translation (200 aa):
MKPYFCRVFVFCFLIRLLTGEINGSADHRMFSFHNGGVQISCKYPETVQQLKMRLFREREVLCELTKTKG
SGNAVSIKNPMLCLYHLSNNSVSFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGGYLHIYESQLCCQL
KLWLPVGCAAFVVVLLFGCILIIWFSKKKYGSSVHDPNSEYMFMAAVNTNKKSRLAGVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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