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Report for CCDS30249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30249.1 Public Mus musculus X Pbsn 23 108 98 CCDS HistoryNCBI Gene:54192Re-query CCDS DB by CCDS ID:30249.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000003.13 ENSMUSP00000000003.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000003.13Link to Ensembl Protein Viewer:ENSMUSP00000000003.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000003Re-query CCDS DB by Protein ID:ENSMUSP00000000003
Original member NCBI NM_017471.2 NP_059499.1 Updated not alive Link to Nucleotide Sequence:NM_017471.2Link to Protein Sequence:NP_059499.1Re-query CCDS DB by Nucleotide ID:NM_017471Re-query CCDS DB by Protein ID:NP_059499
Current member NCBI NM_017471.3 NP_059499.1 Accepted alive Link to Nucleotide Sequence:NM_017471.3Link to Protein Sequence:NP_059499.1Re-query CCDS DB by Nucleotide ID:NM_017471Re-query CCDS DB by Protein ID:NP_059499Link to BLAST:NP_059499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059499.1 174 O08976 174 100% 0 0

Chromosomal Locations for CCDS 30249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 77841883 77841911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77842515 77842616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77842897 77843007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77845019 77845086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77847975 77848114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77853409 77853483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGATGAGGGTCATCATCCTCCTGCTCACACTGCATGTGCTAGGCGTCTCCAGTGTGATGAGTCTCAAAA
AGAAGATTGACGGGCCTTGGCAAACAATTTACTTAGCTGCCAGTACCATGGAAAAGATAAATGAAGGCTC
ACCATTGAGAACCTACTTCCGTCACATTTTGTGTGGGAGGAGATGCAACCAAGTCTACCTCTATTTTTTT
ATTAAGAAAGGGACTAAGTGCCAACTGTATAAAGTCATAGGAAGGAAAAAACAAGAAGTTTACTATGCAC
AGTATGAAGGGAGCATAGCATTCATGTTAAAGATGGTAAATGAGAAGATATTGTTGTTTCATTATTTTAA
CAAGAACAGAAGAAATGATGTCACACGAGTGGCTGGAGTTTTGGCAAAAGGCAAACAACTGAATAAGGAG
GAGATGACGGAGTTCATGAACTTAGTGGAAGAAATGGGCATTGAGGAAGAGAATGTACAGCGTATCATGG
ACACGGACAACTGTCCAAGCAAGATCAAACCTTAG

Translation (174 aa):
MMRVIILLLTLHVLGVSSVMSLKKKIDGPWQTIYLAASTMEKINEGSPLRTYFRHILCGRRCNQVYLYFF
IKKGTKCQLYKVIGRKKQEVYYAQYEGSIAFMLKMVNEKILLFHYFNKNRRNDVTRVAGVLAKGKQLNKE
EMTEFMNLVEEMGIEEENVQRIMDTDNCPSKIKP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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