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Report for CCDS50058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50058.1 Public Mus musculus 17 Akap8l 23 108 98 CCDS HistoryNCBI Gene:54194Re-query CCDS DB by CCDS ID:50058.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050214.8 ENSMUSP00000051389.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050214.8Link to Ensembl Protein Viewer:ENSMUSP00000051389.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050214Re-query CCDS DB by Protein ID:ENSMUSP00000051389
Original member NCBI NM_017476.2 NP_059504.2 Updated not alive Link to Nucleotide Sequence:NM_017476.2Link to Protein Sequence:NP_059504.2Re-query CCDS DB by Nucleotide ID:NM_017476Re-query CCDS DB by Protein ID:NP_059504
Current member NCBI NM_017476.3 NP_059504.2 Accepted alive Link to Nucleotide Sequence:NM_017476.3Link to Protein Sequence:NP_059504.2Re-query CCDS DB by Nucleotide ID:NM_017476Re-query CCDS DB by Protein ID:NP_059504Link to BLAST:NP_059504.2

Chromosomal Locations for CCDS 50058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32321492 32321785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32321896 32321991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32332479 32332609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32332811 32332916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32333003 32333144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32334588 32334696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32335563 32335623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32335958 32336028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32336107 32336203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32336285 32336738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32338271 32338514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32338791 32338823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32345324 32345398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32350487 32350499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGAGCTACACAGGTTTTGTCCAAGGATCCGAAACCACTTTGCAGTCTACGTACTGTGACACCAGTGCCC
AGCCCACCTGTGATTATGGATATGGAACTTGGAACTCTGGGACAAATAGAGGCTACGAGAACTATGGTTA
TGGCTATGGCTATGGCCAGGATAACACCACCAACTATGGGTATGGTATGGCCACTTCACACTCTTGGGAA
ATGGCTAGCTCTGACACAAATGCAAACCCTAGTGCCTCGGGTAGCGCCAGTGCCGATTCCGTTTTATCCA
GAATTAACCAGCGCTTAGATATGATGCCGCACTTGGAGACAGACATGATACAAGGAGGTGTGTACGGCTC
AGGTGGTGGAGAGAGATATGACTCCTATGAGGCCTGTGACTCAAGGGCCATCCTGAGTGAACGAGACCTC
TACCGGTCAAGCTATGACTATGGCGAGCTTGACCCTGAGATGGAAATGGCCTATGAGGGCCAATATGATG
CCTACCGTGACCAGTTTCGAATGCGTGGAGGAGATACATTTGGTCCAAGGGCTCAGGGCTGGGCCCGGGA
TGCCCGGAGTGGACGGCCAATGGCCTCGGGCTATGGGCGCATGTGGGAAGATCCCATGGGGGCCCGGGGC
CAGTGCATGCCTGGTGCCTCCCGGCTGCCCTCCCTCTTCTCCCAGAACATCATACCCGAGTATGGCATGT
TCCAGGGCATGCGTGGTGGGGGTGCCTTCTCTGGTGGCTCCCGATTTGGCTTTGGATTTGGCAATGGCAT
GAAGCAGATGAGGCGTACCTGGAAGACCTGGACCACAGCCGACTTCCGGACCAAAAAGAAGAAGAGAAAG
CAGGGTGGCAGTCCTGATGAGCCAGACAGCAAAGCTACCAGAACAGACTGCTCAGACAACAGTGACTCAG
ACAATGATGAAGGCACTGAGGGGGAAGCTGCAGAGGGTACTGAAAGTGCTGAGGCTATGGAGAAAGGCTC
CCGAGCAGAAGGAGAAGACGAGGAGGGAAAAGAGGATGGGAGAGAAGGCAAAGAAGATTCGGAGAAAGGG
GCCCTGACCGCCCAGGATGAGAGCAGCCAGGCCAAGCGCAAGTTGCAGGCAAGCAAGAAGAGCCAAGACA
AACAGAAAAAGCGGCAGCGAGACCGTATGGTGGAAAGGATCCAGTTTGTGTGTTCTCTCTGCAAATACCG
GACCTTCTATGAGGATGAGATGGGTAGCCACCTTGACAGCAAGTTCCACAAGGAACACTTCAAATATGTA
GGCACCAAGCTTCCAAAGCAAACTGCTGACTTCCTGCAGGAATATGTCACCAACAAGACCAAGAAGACGG
AGGAGCTCCGAAAAACTGTGGAGGACCTTGATGGTCTGATCCAACAAATCTACAGAGACCAAGATCTGAC
CCAAGAGATTGCTATGGAGCATTTTGTGAAGAAGGTAGAGGCGGCCCACTGTGCAGCCTGTGACCTTTTC
ATCCCCATGCAGTTTGGAATCATCCAAAAGCATCTCAAGACGATGGATCACAACCGAAACCGCAGGCTTA
TGATGGAGCAGTCCAAGAAGTCCTCGCTTATGGTGGCCCGCAGTATTCTCAACAACAAGCTCATTAGCAA
GAAGCTGGAGCGATATCTGAAGGGCGAGAATCCTTTCACTGACAACCCAGAGGAGGAAAAGGAACAAGAC
GAGGTGGAGGCTGGCGCTCTGGATGAAGGGGCACCAAGCGAAGCGACAGAGCTCACAGAGGGCGTGCCGG
CACAGCCCCCCGTGCCCCTGGAGCCCGCCCCAGGGACTACAACACCGCCACCTCCGCCACCACCAGAAGA
GGAGGAGAGCCCTGTACCCTTGCTGGGCGGAGCGCTGCAGTGTCAGATCCGCGGGATCCCGGGCCTCGAC
ATGGAAGACGACGAGGAGGGCGGTGGGGGTCCATAA

Translation (641 aa):
MSYTGFVQGSETTLQSTYCDTSAQPTCDYGYGTWNSGTNRGYENYGYGYGYGQDNTTNYGYGMATSHSWE
MASSDTNANPSASGSASADSVLSRINQRLDMMPHLETDMIQGGVYGSGGGERYDSYEACDSRAILSERDL
YRSSYDYGELDPEMEMAYEGQYDAYRDQFRMRGGDTFGPRAQGWARDARSGRPMASGYGRMWEDPMGARG
QCMPGASRLPSLFSQNIIPEYGMFQGMRGGGAFSGGSRFGFGFGNGMKQMRRTWKTWTTADFRTKKKKRK
QGGSPDEPDSKATRTDCSDNSDSDNDEGTEGEAAEGTESAEAMEKGSRAEGEDEEGKEDGREGKEDSEKG
ALTAQDESSQAKRKLQASKKSQDKQKKRQRDRMVERIQFVCSLCKYRTFYEDEMGSHLDSKFHKEHFKYV
GTKLPKQTADFLQEYVTNKTKKTEELRKTVEDLDGLIQQIYRDQDLTQEIAMEHFVKKVEAAHCAACDLF
IPMQFGIIQKHLKTMDHNRNRRLMMEQSKKSSLMVARSILNNKLISKKLERYLKGENPFTDNPEEEKEQD
EVEAGALDEGAPSEATELTEGVPAQPPVPLEPAPGTTTPPPPPPPEEEESPVPLLGGALQCQIRGIPGLD
MEDDEEGGGGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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