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Report for CCDS39726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39726.1 Public Mus musculus 7 Cacng6 23 108 98 CCDS HistoryNCBI Gene:54378Re-query CCDS DB by CCDS ID:39726.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183200.7 ENSMUSP00000138622.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183200.7Link to Ensembl Protein Viewer:ENSMUSP00000138622.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183200Re-query CCDS DB by Protein ID:ENSMUSP00000138622
Original member Current member NCBI NM_133183.2 NP_573446.1 Accepted alive Link to Nucleotide Sequence:NM_133183.2Link to Protein Sequence:NP_573446.1Re-query CCDS DB by Nucleotide ID:NM_133183Re-query CCDS DB by Protein ID:NP_573446Link to BLAST:NP_573446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573446.1 260 Q8VHW3 260 100% 0 0

Chromosomal Locations for CCDS 39726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 3424662 3424992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3430438 3430512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3431819 3431956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3434702 3434940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGATGTGGTCTAACTTCTTCATGCAAGAGGAAGACCGACGCCGGACAGCTGTGGGCCGGCGTCGTGCCC
AAGAACAGCAGAATCTCGGCTTGACTCCGGAGCGAGAGGGCAAGATCAAGCTGGGGTTGCTGGTGGCAAT
CGTGGGTGCTACGCTGGCTGTGCTGGCTGTGGGCACCGAGTTCTGGGTGGAACTCAATACATACAAGACC
AATGGCAGCGCCGTCTGTGAGGCCGCCCATTTGGGGCTGTGGAAGGTGTGCATCAAGCGACTGTGGCAGG
CGGATGTGCCCGCGGGCAGGGAGACCTGTGGCCCAGCTGAGCTGCCAGGAGAAGCAAACTGCACCTACTT
CAAATTCTTCACCACGGGGGAAAATGCGCGCATCTTCCAGCGAACCACCAAGAAAGAGGTAAACCTGGCA
GCTGCCGTGATAGCTGTGCTGGGCCTGACGGCCATGGCCTTGGGCTGCCTCTGTGTCATCATGGTGCTCA
GTAAAGGTGCAGAGTCCCTGCTCCGATTGGGAGCTGTCTGCTTTGGCCTCTCAGGCCTGCTGCTCTTTGT
CAGCCTGGAGGTGTTCCGGCATTCCGTAGGAGCCCTGCTGCAGGGAGTCAACCCTGAGACCCCTCCAGCT
CCACGCCTGGCCTATGAGTATTCCTGGTCCTTAGGCTGTGGTGTGGGCGCTGGTCTAATCCTGCTGCTGG
GGGGAGTCTGTTTCCTCCTGCTCACCTTGCCTTCCTGGCCCTGGAGGTCACTGTGCCCCAAGTGGGGTGG
CCCAACCGCCTAG

Translation (260 aa):
MMWSNFFMQEEDRRRTAVGRRRAQEQQNLGLTPEREGKIKLGLLVAIVGATLAVLAVGTEFWVELNTYKT
NGSAVCEAAHLGLWKVCIKRLWQADVPAGRETCGPAELPGEANCTYFKFFTTGENARIFQRTTKKEVNLA
AAVIAVLGLTAMALGCLCVIMVLSKGAESLLRLGAVCFGLSGLLLFVSLEVFRHSVGALLQGVNPETPPA
PRLAYEYSWSLGCGVGAGLILLLGGVCFLLLTLPSWPWRSLCPKWGGPTA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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