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Report for CCDS29749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29749.1 Public Mus musculus 19 Asah2 23 108 98 CCDS HistoryNCBI Gene:54447Re-query CCDS DB by CCDS ID:29749.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096119.4 ENSMUSP00000093830.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096119.4Link to Ensembl Protein Viewer:ENSMUSP00000093830.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096119Re-query CCDS DB by Protein ID:ENSMUSP00000093830
Original member Current member EBI ENSMUST00000237104.1 ENSMUSP00000157424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237104.1Link to Ensembl Protein Viewer:ENSMUSP00000157424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237104Re-query CCDS DB by Protein ID:ENSMUSP00000157424
Original member Current member EBI ENSMUST00000236504.1 ENSMUSP00000157744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236504.1Link to Ensembl Protein Viewer:ENSMUSP00000157744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236504Re-query CCDS DB by Protein ID:ENSMUSP00000157744
Original member Current member EBI ENSMUST00000236030.1 ENSMUSP00000158185.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236030.1Link to Ensembl Protein Viewer:ENSMUSP00000158185.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236030Re-query CCDS DB by Protein ID:ENSMUSP00000158185
Original member Current member NCBI NM_018830.1 NP_061300.1 Accepted alive Link to Nucleotide Sequence:NM_018830.1Link to Protein Sequence:NP_061300.1Re-query CCDS DB by Nucleotide ID:NM_018830Re-query CCDS DB by Protein ID:NP_061300Link to BLAST:NP_061300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061300.1 756 Q9JHE3 756 100% 0 0

Chromosomal Locations for CCDS 29749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 31986758 31986947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31992002 31992090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31995342 31995401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32003684 32003830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32006258 32006353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32008580 32008675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32009406 32009445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32012426 32012520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32014202 32014317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32016485 32016566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32016684 32016788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32018942 32019028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32022254 32022379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32024801 32024921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32043481 32043558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32044890 32045017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32046085 32046261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32052833 32052982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32054480 32054640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32057797 32057923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGGCAAAGCGAACCTTCTCCACCTTGGAGGCATTCCTCATTTTCCTTCTGGTAATAATGACAGTCATCA
CAGTGGCCCTTCTCACCCTCTTGTTTGTTACCAGTGGGACCATTGAAAACCACAAAGATTCAGGAAATCA
CTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCT
TCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATA
TCAATTTGATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTGTTCAGCCGTGC
TTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCC
CAACGACTGAGGTTGGAGGTCCTGAAGAGACTAGAGAGTAAATATGGCTCTCTGTATCGAAGAGACAATG
TTATCCTGAGTGCCATTCACACACACTCTGGCCCAGCAGGGTTTTTCCAATATACACTCTATATACTCGC
CAGCGAGGGATTCAGCAACCGGACCTTTCAGTACATAGTCTCTGGGATCATGAAGAGCATTGATATAGCT
CACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAA
GCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAGGTATTCTTCAAACACAGACAAGGAAAT
GCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAGCTGGTTTGCCATCCACCCC
GTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGC
AAGAAAAGAACAAAGGCTATCTGCCTGGACAGGGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGG
AGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGC
ACCTGTCCCAACGGTGGGCCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACAC
ACATTATAGGACGGATCATCTATCAGAAGGCCAAGGAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGG
CCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA
GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCA
ATATTACACAGGGAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACC
ATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAGCTGACGATACCA
CATCCTTGGCAACCAGATATTGTTGATGTTCAGATTGTTACCGTTGGGTCCTTGGCCATAGCTGCTATCC
CTGGGGAATTAACAACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAAGAATTTGCACTTTATGG
GATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAA
GAATACCAGGCTCAGCGGTACGAGGCAGCATCTACAATCTATGGACCACACACCCTGTCTGCATACATCC
AACTCTTCAGAGACCTTGCTAAGGCAATTGCTACGGACACAGTAGCCAACATGAGCAGTGGTCCCGAGCC
TCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACAT
TTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTGGGAGAAGTGGTTGAAGTTATATTTGTAG
GCGCTAACCCAAAGAATTCAGCAGAGAACCAGACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGA
CTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGAGGTTTTATTGGCACAAAGGA
ATACTGGGTCTGAGCAATGCAACAATATACTGGCATATTCCAGATACTGCCTACCCTGGAATCTACAGAA
TAAGATATTTTGGACACAATCGGAAGCAGGAACTTCTGAAACCCGCTGTCATACTAGCATTTGAAGGAAT
TTCTTCTCCTTTTGAAGTTGTCACTACTTAG

Translation (756 aa):
MAKRTFSTLEAFLIFLLVIMTVITVALLTLLFVTSGTIENHKDSGNHWFSTTLGSTTTQPPPITQTPNFP
SFRNFSGYYIGVGRADCTGQVSDINLMGYGKNGQNARGLLTRLFSRAFILADPDGSNRMAFVSVELCMIS
QRLRLEVLKRLESKYGSLYRRDNVILSAIHTHSGPAGFFQYTLYILASEGFSNRTFQYIVSGIMKSIDIA
HTNLKPGKIFINKGNVANVQINRSPSSYLLNPQSERARYSSNTDKEMLVLKLVDLNGEDLGLISWFAIHP
VSMNNSNHFVNSDNMGYAAYLFEQEKNKGYLPGQGPFVAGFASSNLGDVSPNILGPHCVNTGESCDNDKS
TCPNGGPSMCMASGPGQDMFESTHIIGRIIYQKAKELYASASQEVTGPVLAAHQWVNMTDVSVQLNATHT
VKTCKPALGYSFAAGTIDGVSGLNITQGTTEGDPFWDTLRDQLLGKPSEEIVECQKPKPILLHSGELTIP
HPWQPDIVDVQIVTVGSLAIAAIPGELTTMSGRRFREAIKKEFALYGMKDMTVVIAGLSNVYTHYITTYE
EYQAQRYEAASTIYGPHTLSAYIQLFRDLAKAIATDTVANMSSGPEPPFFKNLIASLIPNIADRAPIGKH
FGDVLQPAKPEYRVGEVVEVIFVGANPKNSAENQTHQTFLTVEKYEDSVADWQIMYNDASWETRFYWHKG
ILGLSNATIYWHIPDTAYPGIYRIRYFGHNRKQELLKPAVILAFEGISSPFEVVTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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