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Report for CCDS90946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90946.1 Public Homo sapiens 1 STIL 24 110 108 CCDS HistoryNCBI Gene:6491Re-query CCDS DB by CCDS ID:90946.1Re-query CCDS DB by GeneID:6491See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 90946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447475.7 ENSP00000411664.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447475.7Link to Ensembl Protein Viewer:ENSP00000411664.3Re-query CCDS DB by Nucleotide ID:ENST00000447475Re-query CCDS DB by Protein ID:ENSP00000411664
Original member Current member NCBI NM_001282939.1 NP_001269868.1 Accepted alive Link to Nucleotide Sequence:NM_001282939.1Link to Protein Sequence:NP_001269868.1Re-query CCDS DB by Nucleotide ID:NM_001282939Re-query CCDS DB by Protein ID:NP_001269868Link to BLAST:NP_001269868.1

Chromosomal Locations for CCDS 90946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 47251136 47251922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47260289 47260539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47262903 47263062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47269635 47269866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47272076 47272241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47280241 47281209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47282345 47282459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47287551 47287660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47289435 47289585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47293458 47293544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47295765 47295848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47299905 47299968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47300110 47300152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47301561 47301748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47302234 47302346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47304889 47304996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 47310276 47310319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3672 nt):
ATGGAGCCTATATATCCTTTTGCACGGCCCCAGATGAATACCAGGTTTCCTTCAAGCAGGATGGTACCTT
TCCACTTTCCTCCATCAAAATGTGCACTTTGGAACCCAACGCCAACTGGAGATTTCATCTACTTACATCT
CAGTTACTACAGAAATCCAAAGCTTGTGGTGACTGAGAAGACCATCCGACTTGCTTATCGTCATGCTAAG
CAGAATAAAAAAAATTCGTCATGCTTTTTACTTGGTTCTCTGACAGCAGACGAAGATGAAGAAGGTGTAA
CATTGACAGTAGATCGCTTTGATCCTGGTCGAGAAGTACCTGAATGCCTAGAAATAACCCCTACTGCTTC
TCTTCCTGGGGACTTTTTGATTCCATGCAAAGTTCATACTCAAGAACTTTGTTCAAGAGAAATGATAGTT
CACAGTGTAGATGACTTCAGTTCAGCTTTAAAGGCTCTACAGTGCCATATATGTAGCAAAGATTCCTTGG
ACTGTGCTCTGGCAAGAAACTTGAGCAGTAATCTGAATATTTCTCAAGTTCAAGGGACTTATAAATATGG
ATATCTTACCATGGATGAAACACGCAAATTGTTACTTTTGTTGGAATCTGATCCCAAGGTTTATTCTCTA
CCATTGGTGGGAATTTGGCTGTCTGGAATTACACATATCTATAGTCCTCAGGTATGGGCTTGCTGTTTGC
GATACATATTCAATTCTTCTGTTCAAGAAAGGGTTTTTTCAGAATCTGGAAATTTCATCATAGTTCTCTA
TTCTATGACACATAAGGAACCTGAGTTTTATGAATGCTTCCCTTGTGATGGCAAGATACCTGACTTTCGG
TTTCAGTTGCTAACCAGTAAGGAAACATTACATCTTTTCAAAAATGTTGAACCTCCTGACAAAAATCCAA
TCCGTTGTGAACTGAGCGCTGAAAGCCAAAATGCAGAAACAGAGTTTTTCAGTAAGGCTTCCAAGAATTT
TTCAATTAAGAGGTCTTCCCAAAAGTTATCTTCTGGGAAGATGCCAATACATGATCACGACTCTGGTGTT
GAAGATGAAGATTTTTCTCCAAGACCAATTCCTAGTCCTCATCCAGTGAGTCAGAAGATTTCTAAGATCC
AACCATCAGTTCCTGAACTTTCACTTGTGTTGGATGGCAATTTCATAGAATCAAACCCTCTGCCTACTCC
ATTGGAAATGGTGAATAATGAAAATCCTCCTTTGATTAACCACTTGGAACACTTGAAGCCATTGCAACCC
CAGCTTTATGATGAGAAACACAGTCCAGAAGTTGAAGCTGGAGAGCCTTCCTTGAGAGGAATACCAAATC
AGTTAAACCAGGATAAACCAGCTCTTTTGAGACACTGCAAAGTAAGACAGCCACCTGCCTATAAGAAAGG
GAACCCCCATACCAGGAACAGTATTAAACCATCTTCTCATAATGGGCCATCTCATGATATATTTGAAAAG
CTCCAAACAGTTTCTGCTGGAAATGTACAAAACGAAGAGTATCCTATAAGACCCTCCACACTTAATTCTA
GGCAGTCTTCTCTTGCCCCGCAGTCCCAACCACACGATTTTGTTTTTTCACCCCATAATTCAGGAAGACC
AATGGAACTTCAGATACCTACTCCCCCACTGCCATCTTACTGTTCCACAAACGTTTGCAGGTGTTGTCAG
CATCATAGTCATATTCAATATAGTCCGCTAAATTCTTGGCAAGGAGCAAACACAGTTGGATCCATTCAAG
ATGTCCAGTCTGAAGCCCTTCAAAAGCATTCATTATTTCACCCAAGTGGATGTCCAGCCCTGTACTGTAA
TGCATTCTGTTCTTCAAGTAGTCCTATAGCCTTGAGACCTCAGGGAGATATGGGCAGTTGTTCTCCCCAC
AGCAATATTGAACCATCGCCTGTGGCAAGACCGCCTTCACATATGGACTTATGTAACCCACAGCCTTGCA
CAGTGTGCATGCACACACCCAAGACTGAGTCAGATAATGGAATGATGGGACTATCTCCAGATGCATATCG
GTTCCTCACAGAACAAGACAGACAGCTAAGACTACTTCAGGCACAGATTCAGCGTTTGTTGGAAGCACAG
TCTCTGATGCCCTGTTCCCCTAAGACAACTGCTGTTGAAGACACAGTGCAAGCTGGAAGACAAATGGAGT
TGGTTTCTGTGGAAGCACAGTCTTCCCCTGGCTTGCACATGAGAAAAGGTGTAAGCATTGCTGTGAGCAC
AGGTGCTAGCTTGTTTTGGAATGCAGCAGGTGAGGATCAAGAGCCTGACTCTCAAATGAAGCAAGATGAT
ACCAAAATTTCCAGTGAGGACATGAATTTTTCTGTCGATATTAATAATGAAGTCACAAGTCTTCCAGGTA
GTGCATCTTCATTAAAAGCAGTTGATATTCCCAGTTTTGAAGAGAGCAACATTGCTGTGGAAGAAGAATT
TAACCAGCCACTTTCTGTATCCAATGGCCAGCTGGCAGAAAGTGTAAGCATGTGTTTACAGACTGGACCA
ACAGGGGGTGCCAGTAACAATTCTGAAACATCAGAGGAACCAAAAATTGAGCATGTAATGCAACCCTTGC
TTCATCAACCATCAGATAACCAGAAAATTTACCAGGATTTATTGGGTCAAGTAAACCACCTATTAAATAG
TTCCTCCAAGGAAACTGAGCAGCCGTCTACCAAAGCAGTAATTATCAGTCATGAATGCACCAGAACCCAA
AACGTTTACCATACAAAGAAAAAAACACATCATTCAAGACTGGTGGACAAAGATTGTGTCCTTAATGCAA
CTCTTAAGCAACTAAGAAGCCTTGGAGTAAAAATTGATTCTCCCACTAAAGTGAAGAAAAATGCACATAA
CGTGGATCACGCCAGTGTGTTGGCATGCATCAGCCCAGAAGCAGTGATCTCTGGATTAAACTGCATGTCA
TTTGCTAATGTTGGCATGAGCGGCTTAAGCCCCAATGGTGTGGATTTGAGCATGGAGGCAAATGCTATAG
CTCTGAAATATTTAAATGAAAATCAGCTGTCACAACTGTCTGTCACTCGATCGAACCAAAATAATTGTGA
CCCATTCAGCCTTCTCCATATTAATACAGACAGAAGCACAGTGGGGCTTAGTTTAATTTCACCAAACAAC
ATGTCATTTGCAACCAAAAAATATATGAAGAGATATGGACTCCTACAAAGCAGTGACAATAGTGAAGATG
AAGAGGAACCTCCCGACAATGCAGATAGCAAGAGTGAATATTTATTGAATCAGAACCTTAGGTCCATACC
TGAACAGCTTGGTGGTCAGAAAGAGCCTTCTAAGAATGACCATGAAATAATTAATTGTTCTAACTGTGAA
TCTGTGGGGACCAACGCAGATACGCCAGTATTGAGAAATATTACAAATGAAGTTTTGCAGACAAAAGCAA
AACAGCAGTTGACTGAAAAGCCAGCTTTCTTAGTAAAGAACCTTAAACCAAGTCCTGCAGTGAACCTTCG
AACCGGGAAAGCAGAGTTCACTCAACATCCTGAGAAAGAAAATGAAGGGGACATTACAATTTTTCCTGAA
AGTTTGCAACCTTCTGAAACGCTAAAGCAGATGAATAGCATGAATTCAGTAGGCACCTTCTTAGATGTAA
AACGTCTCAGACAGTTACCAAAATTATTTTAA

Translation (1223 aa):
MEPIYPFARPQMNTRFPSSRMVPFHFPPSKCALWNPTPTGDFIYLHLSYYRNPKLVVTEKTIRLAYRHAK
QNKKNSSCFLLGSLTADEDEEGVTLTVDRFDPGREVPECLEITPTASLPGDFLIPCKVHTQELCSREMIV
HSVDDFSSALKALQCHICSKDSLDCALARNLSSNLNISQVQGTYKYGYLTMDETRKLLLLLESDPKVYSL
PLVGIWLSGITHIYSPQVWACCLRYIFNSSVQERVFSESGNFIIVLYSMTHKEPEFYECFPCDGKIPDFR
FQLLTSKETLHLFKNVEPPDKNPIRCELSAESQNAETEFFSKASKNFSIKRSSQKLSSGKMPIHDHDSGV
EDEDFSPRPIPSPHPVSQKISKIQPSVPELSLVLDGNFIESNPLPTPLEMVNNENPPLINHLEHLKPLQP
QLYDEKHSPEVEAGEPSLRGIPNQLNQDKPALLRHCKVRQPPAYKKGNPHTRNSIKPSSHNGPSHDIFEK
LQTVSAGNVQNEEYPIRPSTLNSRQSSLAPQSQPHDFVFSPHNSGRPMELQIPTPPLPSYCSTNVCRCCQ
HHSHIQYSPLNSWQGANTVGSIQDVQSEALQKHSLFHPSGCPALYCNAFCSSSSPIALRPQGDMGSCSPH
SNIEPSPVARPPSHMDLCNPQPCTVCMHTPKTESDNGMMGLSPDAYRFLTEQDRQLRLLQAQIQRLLEAQ
SLMPCSPKTTAVEDTVQAGRQMELVSVEAQSSPGLHMRKGVSIAVSTGASLFWNAAGEDQEPDSQMKQDD
TKISSEDMNFSVDINNEVTSLPGSASSLKAVDIPSFEESNIAVEEEFNQPLSVSNGQLAESVSMCLQTGP
TGGASNNSETSEEPKIEHVMQPLLHQPSDNQKIYQDLLGQVNHLLNSSSKETEQPSTKAVIISHECTRTQ
NVYHTKKKTHHSRLVDKDCVLNATLKQLRSLGVKIDSPTKVKKNAHNVDHASVLACISPEAVISGLNCMS
FANVGMSGLSPNGVDLSMEANAIALKYLNENQLSQLSVTRSNQNNCDPFSLLHINTDRSTVGLSLISPNN
MSFATKKYMKRYGLLQSSDNSEDEEEPPDNADSKSEYLLNQNLRSIPEQLGGQKEPSKNDHEIINCSNCE
SVGTNADTPVLRNITNEVLQTKAKQQLTEKPAFLVKNLKPSPAVNLRTGKAEFTQHPEKENEGDITIFPE
SLQPSETLKQMNSMNSVGTFLDVKRLRQLPKLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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