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Report for CCDS41077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41077.1 Public Mus musculus X Foxo4 23 108 98 CCDS HistoryNCBI Gene:54601Re-query CCDS DB by CCDS ID:41077.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062000.5 ENSMUSP00000059420.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062000.5Link to Ensembl Protein Viewer:ENSMUSP00000059420.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062000Re-query CCDS DB by Protein ID:ENSMUSP00000059420
Original member Current member NCBI NM_018789.2 NP_061259.1 Accepted alive Link to Nucleotide Sequence:NM_018789.2Link to Protein Sequence:NP_061259.1Re-query CCDS DB by Nucleotide ID:NM_018789Re-query CCDS DB by Protein ID:NP_061259Link to BLAST:NP_061259.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061259.1 505 Q9WVH3 505 100% 0 0

Chromosomal Locations for CCDS 41077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101254821 101255273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101258177 101259233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101259515 101259522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGATCCAGAGAATAAGAAGTCAGCCACAGGGGCTGCCGCGATCCTAGACCTCGATCCCGACTTCGAAC
CCCAGAGCCGTCCGCGATCCTGCACCTGGCCCCTTCCTCGACCAGACCTCGCTACGGAGCCACACGAACC
GTCCGAGGTGGAGCCCAGTCTGGGACAGAAGGTACCCACGGAGGGACACTCCGAACCGATCCTGTTGCCC
TCTCGGCTCCCAGAGCCGGCAGGGGGCCCCCAGCCGGGAATCCTGGGGGCTGTAACAGGTCCTCGGAAGG
GAGGCTCCCGCCGGAATGCCTGGGGAAATCAGTCATATGCAGAACTCATCAGCCAGGCCATTGAAAGCGC
CCCGGAGAAGCGGCTGACACTCGCCCAGATCTACGAATGGATGGTCCGCACGGTGCCCTACTTCAAGGAC
AAGGGTGACAGCAACAGCTCGGCAGGATGGAAGAACTCCATCCGTCACAACCTGTCCTTGCACAGCAAGT
TCATCAAGGTTCACAACGAGGCCACTGGCAAGAGCTCTTGGTGGATGCTGAACCCCGATGGCGGCAAGGG
TGGCAAGGCACCCCGCCGCAGGGCTGCCTCCATGGATAGCAGCAGCAAGCTGCTCCGGGGCCGCAGCAAA
GGCCCCAAGAAGAAGCCGTCTGTCCTGCCAGCTCCACCGGAAGGTGCCACGCCAAGGAGCCCTCTGGGCC
ACTTTGCCAAGTGGTCAAGCAGCCCTTGTCCTCGAAATCGAGAAGAAGCTGATGTGTGGACCACTTTCCG
TCCACGAAGCAGTTCAAATGCTAGCACCGTCAGCACCCGGCTGTCGCCAATGAGGCCGGAGTCTGAAGTG
CTAGCAGAAGAGGAAATGCCAGCCTCGGCCAGCAGCTATGCAGGGGGGGTCCCTCCCACGCTCAGTGAAG
ATCTAGAGCTACTGGATGGGCTCAATCTCGCATCTCCCCATTCCTTGCTCTCTAGGAGCGGTCTCTCCGG
CTTCTCTTTGCAGCATCCTGGGCTTGCTGGCCCCTTACATAGCTATGGTGCCTCCCTCTTTGGCCCAATA
GATGGGTCTTTGTCAGCAGGAGAAGGGTGCTTCTCAAGTTCCCAGTCTCTAGAGGCTCTGCTCACCTCTG
ATACACCACCACCTCCTGCTGATGTCCTCATGACCCAGGTAGATCCTATCCTGTCTCAGGCTCCTACACT
TCTGTTACTGGGAGGAATGCCTTCCTCTAGCAAGCTGGGCACAGGAGTCAGCCTGTGTCCTACGCCGCTA
GAGGGTCCTGGTCCCAGCAACCTGGTCCCCAACCTTTCTGTGATGGCACCACCCCCAGTCATGGCAGGCG
CTCCCATCCCTAAGGTCCTGGGAACCCCTGTGCTCGCATCTCCTACTGAAGATTCCAGCCATGACAGAAT
GCCTCAGGATCTGGATCTTGATATGTATATGGAGAACCTGGAGTGCGACATGGATAACATCATCAGTGAC
CTCATGGATGGTGAGGGACTGGACTTCAACTTTGAGCCAGATCCCTGA

Translation (505 aa):
MDPENKKSATGAAAILDLDPDFEPQSRPRSCTWPLPRPDLATEPHEPSEVEPSLGQKVPTEGHSEPILLP
SRLPEPAGGPQPGILGAVTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKD
KGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPDGGKGGKAPRRRAASMDSSSKLLRGRSK
GPKKKPSVLPAPPEGATPRSPLGHFAKWSSSPCPRNREEADVWTTFRPRSSSNASTVSTRLSPMRPESEV
LAEEEMPASASSYAGGVPPTLSEDLELLDGLNLASPHSLLSRSGLSGFSLQHPGLAGPLHSYGASLFGPI
DGSLSAGEGCFSSSQSLEALLTSDTPPPPADVLMTQVDPILSQAPTLLLLGGMPSSSKLGTGVSLCPTPL
EGPGPSNLVPNLSVMAPPPVMAGAPIPKVLGTPVLASPTEDSSHDRMPQDLDLDMYMENLECDMDNIISD
LMDGEGLDFNFEPDP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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