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Report for CCDS2685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2685.1 Public Homo sapiens 3 SLC25A38 24 110 108 CCDS HistoryNCBI Gene:54977Re-query CCDS DB by CCDS ID:2685.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650617.1 ENSP00000497532.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650617.1Link to Ensembl Protein Viewer:ENSP00000497532.1Re-query CCDS DB by Nucleotide ID:ENST00000650617Re-query CCDS DB by Protein ID:ENSP00000497532
Original member Current member NCBI NM_017875.4 NP_060345.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017875.4Link to Protein Sequence:NP_060345.2Re-query CCDS DB by Nucleotide ID:NM_017875Re-query CCDS DB by Protein ID:NP_060345Link to BLAST:NP_060345.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060345.2 304 Q96DW6 304 100% 0 0

Chromosomal Locations for CCDS 2685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39383725 39383793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39389495 39389616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39390423 39390507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39391441 39391620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39391853 39392021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39394410 39394576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39396398 39396520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGATTCAGAACTCACGTCCGTCGCTGCTGCAACCCCAAGATGTCGGAGACACGGTGGAAACGCTTATGT
TACATCCGGTGATCAAGGCTTTCCTGTGTGGCTCCATCAGTGGGACCTGCTCTACCCTCCTTTTCCAACC
TCTGGATCTCCTTAAAACACGCCTGCAAACCCTCCAGCCCTCAGATCATGGGTCTAGACGTGTTGGGATG
TTGGCTGTACTCTTGAAGGTGGTTCGCACGGAGAGTCTTTTGGGCCTTTGGAAAGGGATGTCCCCTTCCA
TTGTGAGATGTGTCCCTGGCGTTGGAATCTACTTTGGCACTCTCTACTCTTTGAAGCAGTATTTCTTGCG
AGGCCATCCCCCAACCGCCCTGGAGTCAGTCATGCTGGGGGTGGGCTCTCGCTCTGTTGCAGGGGTCTGT
ATGTCACCTATCACTGTAATCAAGACGCGCTATGAGAGTGGGAAATATGGCTATGAGAGTATCTACGCTG
CCCTGAGGAGCATCTATCACAGTGAGGGGCACCGGGGCCTCTTCAGTGGCCTGACAGCAACTCTCCTTCG
AGATGCGCCCTTCTCAGGAATCTACCTGATGTTTTACAACCAGACCAAAAATATAGTGCCTCATGACCAG
GTGGATGCAACCCTTATTCCTATTACAAATTTCAGCTGTGGGATATTTGCTGGTATTCTGGCCTCACTGG
TAACTCAACCTGCGGATGTTATCAAAACTCATATGCAGCTTTATCCACTGAAGTTTCAATGGATTGGCCA
AGCAGTGACACTTATTTTCAAAGACTATGGACTACGTGGCTTCTTCCAAGGTGGCATCCCCCGAGCCCTC
CGCAGAACTCTAATGGCAGCAATGGCGTGGACGGTGTATGAAGAGATGATGGCCAAGATGGGCCTGAAGT
CCTGA

Translation (304 aa):
MIQNSRPSLLQPQDVGDTVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQPSDHGSRRVGM
LAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTALESVMLGVGSRSVAGVC
MSPITVIKTRYESGKYGYESIYAALRSIYHSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIVPHDQ
VDATLIPITNFSCGIFAGILASLVTQPADVIKTHMQLYPLKFQWIGQAVTLIFKDYGLRGFFQGGIPRAL
RRTLMAAMAWTVYEEMMAKMGLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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