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Report for CCDS43071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43071.1 Public Homo sapiens 3 ULK4 24 110 108 CCDS HistoryNCBI Gene:54986Re-query CCDS DB by CCDS ID:43071.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301831.9 ENSP00000301831.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301831.9Link to Ensembl Protein Viewer:ENSP00000301831.4Re-query CCDS DB by Nucleotide ID:ENST00000301831Re-query CCDS DB by Protein ID:ENSP00000301831
Original member Current member NCBI NM_017886.4 NP_060356.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017886.4Link to Protein Sequence:NP_060356.2Re-query CCDS DB by Nucleotide ID:NM_017886Re-query CCDS DB by Protein ID:NP_060356Link to BLAST:NP_060356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060356.2 1275 Q96C45 1275 100% 0 0

Chromosomal Locations for CCDS 43071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 41246929 41246992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41249489 41249574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41398079 41398264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41455497 41455595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41463087 41463253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41566025 41566130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41615669 41615717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41663607 41663699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41681508 41681652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41681753 41681804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41705057 41705151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41705254 41705305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41715237 41715293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41715447 41715568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41717728 41717861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41754361 41754488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41789661 41789843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41800132 41800293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41819423 41819506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41835864 41835971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41883874 41883952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41895518 41895564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41896822 41897003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41898432 41898492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41900725 41900829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41907845 41907941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41911317 41911386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41911541 41911659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41912807 41912899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41915977 41916052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41918457 41918540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41919717 41919818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41931844 41932006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41935801 41935940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41938098 41938197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41954622 41954759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3828 nt):
ATGGAAAACTTTATTCTGTATGAGGAGATCGGAAGAGGAAGCAAGACTGTTGTCTATAAAGGGCGACGGA
AGGGAACAATCAATTTTGTAGCCATTCTTTGTACTGATAAGTGCAAAAGGCCTGAAATAACCAACTGGGT
CCGTCTCACCCGTGAAATAAAACACAAGAATATTGTAACTTTTCATGAATGGTATGAAACAAGCAACCAC
CTCTGGCTAGTGGTGGAACTCTGCACAGGTGGTTCCTTAAAAACAGTTATTGCTCAAGATGAAAACCTCC
CAGAAGATGTTGTGAGAGAATTTGGAATTGACCTGATTAGTGGATTACATCATCTTCATAAACTTGGCAT
TCTCTTTTGTGACATTTCTCCTAGGAAGATACTCTTGGAAGGGCCTGGCACACTGAAGTTTAGCAACTTT
TGCTTGGCAAAAGTGGAAGGTGAAAATTTGGAAGAGTTCTTTGCTTTGGTGGCAGCAGAGGAAGGAGGAG
GTGATAATGGGGAAAATGTCCTGAAGAAAAGCATGAAAAGTAGAGTCAAAGGATCTCCTGTATATACAGC
ACCAGAAGTTGTGAGGGGTGCTGACTTTTCCATCTCCAGTGACCTCTGGTCTTTGGGCTGTCTGCTTTAT
GAAATGTTTTCAGGAAAACCTCCATTCTTCTCAGAAAGTATTTCAGAATTAACTGAAAAGATCTTATGTG
AAGATCCTTTGCCACCTATTCCGAAAGATTCTTCTCGTCCTAAAGCTTCTTCAGATTTTATTAATTTGCT
TGATGGGTTACTTCAAAGAGATCCTCAGAAAAGATTGACTTGGACAAGGCTACTGCAGCATTCATTTTGG
AAGAAAGCTTTTGCTGGAGCAGATCAGGAATCAAGCGTCGAAGATCTCAGTCTCAGCAGAAACACTATGG
AGTGTTCTGGGCCACAAGATTCCAAGGAGCTTTTGCAGAACTCTCAGAGTAGACAAGCAAAAGGGCACAA
GAGTGGTCAACCACTAGGTCACTCTTTCAGACTAGAAAATCCAACTGAGTTTCGGCCTAAGAGTACTCTT
GAGGGTCAATTGAATGAATCCATGTTTCTTCTCAGTTCTCGTCCTACTCCCAGAACTAGCACTGCAGTGG
AAGTAAGTCCTGGTGAGGATATGACTCACTGTTCACCACAGAAGACTTCTCCTCTGACCAAGATTACAAG
TGGACACCTGAGTCAGCAGGACCTGGAATCCCAGATGAGAGAGCTTATCTACACGGACTCAGATCTTGTT
GTCACCCCCATTATCGACAATCCAAAGATAATGAAACAGCCACCAGTTAAATTTGATGCAAAAATATTGC
ATCTACCAACATATTCAGTGGATAAGTTATTATTTCTGAAAGATCAAGATTGGAATGACTTTTTGCAACA
AGTGTGCTCGCAGATCGACTCCACTGAGAAGAGCATGGGGGCCTCCCGAGCCAAGCTGAATCTCCTTTGC
TATTTGTGCGTGGTGGCTGGTCACCAGGAGGTGGCCACCAGGCTCCTCCATTCCCCCCTGTTCCAATTGC
TAATCCAGCATTTGCGGATAGCTCCAAACTGGGATATACGGGCCAAGGTTGCTCACGTAATTGGTTTACT
GGCTTCGCACACAGCTGAGCTCCAGGAAAATACACCTGTTGTTGAGGCAATTGTTCTCTTAACTGAATTA
ATTAGGGAAAACTTCAGGAACAGCAAATTAAAACAGTGCCTTTTACCAACCCTTGGGGAGCTGATCTATC
TTGTAGCCACCCAGGAAGAAAAAAAAAAGAACCCTAGAGAGTGCTGGGCTGTTCCCTTGGCTGCATACAC
AGTGCTAATGAGGTGCCTTCGGGAAGGGGAAGAGCGTGTTGTGAATCACATGGCAGCAAAAATTATTGAA
AATGTCTGTACCACCTTTTCTGCTCAGTCCCAGGGCTTTATTACAGGAGAAATAGGACCCATTTTGTGGT
ACCTATTCAGACACTCCACTGCTGATTCTCTTAGGATAACAGCAGTATCGGCCTTGTGTAGAATCACTCG
CCATTCTCCTACTGCCTTCCAGAATGTTATTGAAAAGGTGGGACTGAACTCAGTAATAAACTCCCTGGCC
TCTGCCATCTGCAAAGTTCAGCAGTACATGTTGACCTTATTCGCTGCCATGTTGTCCTGTGGGATTCATC
TTCAAAGACTAATCCAAGAAAAGGGTTTTGTCTCCACAATTATCCGTTTACTTGACAGCCCCTCAACATG
CATTAGAGCAAAAGCCTTCCTGGTTCTTCTATATATTTTGATTTATAACCGTGAGATGTTGCTGCTCAGT
TGCCAAGCAAGACTGGTGATGTACATCGAGAGAGACAGCAGAAAGACCACTCCAGGCAAGGAGCAGCAAA
GTGGCAATGAATACCTGTCCAAATGCCTGGATCTTCTCATCTGTCACATTGTGCAGGAGCTGCCACGAAT
CCTGGGTGACATTCTTAACTCCTTGGCTAATGTTTCTGGACGTAAACACCCATCAACAGTTCAAGTGAAA
CAGCTGAAGTTGTGTCTCCCCCTGATGCCTGTAGTGCTTCACCTCGTAACTTCACAGGTATTTCGACCTC
AAGTTGTGACAGAAGAGTTTCTTTTCAGCTATGGAACTATTCTTAGTCATATTAAATCTGTAGACTCAGG
AGAAACGAACATAGATGGAGCCATAGGACTGACAGCATCAGAAGAATTTATCAAGATCACATTGTCAGCT
TTTGAAGCAATAATACAGTATCCTATTTTATTGAAAGACTATCGCTCCACGGTTGTTGACTATATACTGC
CACCCTTGGTGTCCTTGGTTCAAAGCCAAAATGTGGAGTGGAGACTCTTTAGCTTGCGGTTGCTCTCAGA
AACCACATCTCTACTCGTGAACCAGGAGTTTGGGGATGGCAAGGAGAAGGCCAGTGTTGATTCTGACAGC
AATCTTCTGGCTCTCATTCGAGATGTCTTACTTCCCCAGTATGAGCACATTCTTTTAGAACCTGACCCAG
TACCAGCATATGCTCTGAAACTGCTAGTCGCGATGACTGAACACAACCCAACTTTCACAAGACTTGTGGA
AGAAAGCAAACTGATCCCACTCATTTTTGAAGTAACTCTGGAACATCAGGAGAGCATTCTGGGTAATACC
ATGCAAAGTGTGATTGCATTACTCAGCAATCTAGTTGCCTGCAAAGATTCGAATATGGAACTACTTTATG
AACAAGGACTTGTCAGTCACATCTGTAACCTGCTCACTGAAACTGCCACACTGTGCTTGGATGTGGACAA
TAAAAACAACAATGAGATGGCAGCTCCACTGCTCTTTTCCCTGCTTGATATTTTGCACAGCATGCTGACC
TATACCTCCGGTATTGTACGGCTGGCTTTGCAGGCCCAGAAGTCTGGCTCAGGAGAGGACCCTCAGGCTG
CAGAAGACCTGCTGCTGCTCAACAGACCTCTGACAGACCTGATTAGCCTGCTCATTCCACTGCTTCCTAA
TGAAGATCCTGAGATTTTTGATGTTTCATCCAAGTGCCTGTCTATACTGGTTCAGCTGTATGGAGGGGAA
AACCCGGACAGCCTCTCTCCTGAAAATGTGGAAATTTTTGCTCATTTACTGACATCCAAGGAGGACCCAA
AGGAGCAGAAGCTTCTGTTAAGGATTCTCAGAAGAATGATCACCTCCAATGAGAAGCACTTGGAGAGCCT
CAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGGTTCATTTGCCGACAGT
GCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAG

Translation (1275 aa):
MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVTFHEWYETSNH
LWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFCDISPRKILLEGPGTLKFSNF
CLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVKGSPVYTAPEVVRGADFSISSDLWSLGCLLY
EMFSGKPPFFSESISELTEKILCEDPLPPIPKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFW
KKAFAGADQESSVEDLSLSRNTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKSTL
EGQLNESMFLLSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV
VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMGASRAKLNLLC
YLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASHTAELQENTPVVEAIVLLTEL
IRENFRNSKLKQCLLPTLGELIYLVATQEEKKKNPRECWAVPLAAYTVLMRCLREGEERVVNHMAAKIIE
NVCTTFSAQSQGFITGEIGPILWYLFRHSTADSLRITAVSALCRITRHSPTAFQNVIEKVGLNSVINSLA
SAICKVQQYMLTLFAAMLSCGIHLQRLIQEKGFVSTIIRLLDSPSTCIRAKAFLVLLYILIYNREMLLLS
CQARLVMYIERDSRKTTPGKEQQSGNEYLSKCLDLLICHIVQELPRILGDILNSLANVSGRKHPSTVQVK
QLKLCLPLMPVVLHLVTSQVFRPQVVTEEFLFSYGTILSHIKSVDSGETNIDGAIGLTASEEFIKITLSA
FEAIIQYPILLKDYRSTVVDYILPPLVSLVQSQNVEWRLFSLRLLSETTSLLVNQEFGDGKEKASVDSDS
NLLALIRDVLLPQYEHILLEPDPVPAYALKLLVAMTEHNPTFTRLVEESKLIPLIFEVTLEHQESILGNT
MQSVIALLSNLVACKDSNMELLYEQGLVSHICNLLTETATLCLDVDNKNNNEMAAPLLFSLLDILHSMLT
YTSGIVRLALQAQKSGSGEDPQAAEDLLLLNRPLTDLISLLIPLLPNEDPEIFDVSSKCLSILVQLYGGE
NPDSLSPENVEIFAHLLTSKEDPKEQKLLLRILRRMITSNEKHLESLKNAGSLLRALERLAPGSGSFADS
AVAPLALEILQAVGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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