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Report for CCDS20292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20292.1 Public Mus musculus 6 Rab11fip5 23 108 98 CCDS HistoryNCBI Gene:52055Re-query CCDS DB by CCDS ID:20292.1Re-query CCDS DB by GeneID:52055See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060837.9 ENSMUSP00000058305.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060837.9Link to Ensembl Protein Viewer:ENSMUSP00000058305.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060837Re-query CCDS DB by Protein ID:ENSMUSP00000058305
Original member Current member NCBI NM_177466.4 NP_803417.3 Accepted alive Link to Nucleotide Sequence:NM_177466.4Link to Protein Sequence:NP_803417.3Re-query CCDS DB by Nucleotide ID:NM_177466Re-query CCDS DB by Protein ID:NP_803417Link to BLAST:NP_803417.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803417.3 645 Q8R361 645 100% 0 0

Chromosomal Locations for CCDS 20292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85337023 85337226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85337481 85337670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85347780 85348455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85348555 85348991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85374098 85374528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGCTCTGGTGCGGGACCCTGAGCCGGCGGCCGGATCCTCCCGCTGGCTGCCCACGCATGTCCAGGTGA
CCGTGCTGCGGGCCAGCGGGTTGAGGGGCAAGAGCTCGGGCGCCGGCAGCACCAGCGACGCGTACACGGT
GATCCAGGTGGGCCGAGAGAAGTACAGCACCTCGGTAGTGGAGAAGACGCAAGGCTGCCCGGAATGGTGC
GAAGAGTGTTCGTTCGAGCTACCGCCTGGAGCCCTGGACGGCCTGCTGCGGGCACAGGAGGCAGATGCGG
GCCCTGCGCCCTGGGCCTCCGGCCCCAACGCCGCCTGCGAGCTCGTGCTCACCACCATGCATCGCTCACT
CATCGGCGTGGACAAGTTTCTGGGCCGGGCAACCGTAGCTCTGGACGAGGTCTTCCGCGCAGGCCGCGCC
CAGCACACGCAGTGGTACAGGCTTCACTCCAAGCCAGGCAAGAAGGAGAAGGAGCGCGGTGAGATCCAGG
TGACCATCCAGTTCACACGGAACAACCTGAGCGCCAGCATGTTTGATCTTTCCATGAAGGACAAGCCACG
GTCTCCCTTCAGCAAGCTCAAGGACAGAGTGAAGGGCAAGAAGAAGTATGATCTCGAATCTGCCTCAGCG
ATTCTTCCAAGCAGCGCCCTGGAGGATCCTGAGTTAGGCAGCCTGGGCAAGATGGGCAAAGCCAAAGGTT
TCTTCCTCCGAAACAAGCTACGCAAGTCCTCGCTCACACAGTCTAACACCTCTCTGGGCTCTGACAGCAC
CTTGTCTTCCACTAGTGGCAGCCTGGTCTACCAGGGACCCGGGGCGGAGCTCCTCACCCGCTCACCAAGC
CACAGCAGCTGGCTGTCCACTGAAGGGGGTAGGGACTCTATACAGTCCCCCAAGCTGCTCACCCACAAGA
GGACATACAGTGATGAGGCCAGCCAGCTTCGAGCAGCTCCTCCCCGGGCCCTTCTTGAGCTCCAAGGCCA
CCTTGATGGTGCCTCCCGCTCTTCCCTCTGCGTCAATGGGAGCCATGTGTACAATGAGGAACCTCAGCCC
CCCTTACGGCACCGCAGCTCCATCTCAGGCCCCTTTCCACCTTCAAGCTCCTTACACAGTGTCCCACCTC
GGTCCTCTGAGGAGGGGTCTCGGTCCTCGGATGATTCTTGGGGCAGAGGCAGCCATGGCACCAGCAGCTC
AGAGGCAGTGCCTGGACAGGAGGAGCTGAGCAAGCAGGCCAAAGGGGCCAGTTGCTCTGGAGAGGAGGAG
GGGGCCCGGTTACCCGAGGGGAAGCCAGTCCAGGTTGCCACCCCCATGGTGGCCTCCTCTGAGGCTGTGG
CAGCAGAAAAGGATCGGAAGCCCCGAATGGGGCTCTTCCATCACCACCACCACCAAGGGCTGAGTCGGAG
TGAGCAGGGGCGCCGTGGCTCAGTCGGGGAGAAGGGGAGTCCGTCCCTGGGAGCCTCCCCCCACCATTCA
TCCACCGGGGAGGAAAAGGCCAAGAGTAGCTGGTTTGGCCTGAGAGAATCCAAGGAGCCAACTCAGAAGC
CCAGTCCCCACCCTGTGAAACCCCTTACTGCTGCCCCTGTGGAGGCTAGCCCCGACAGGAAACAGCCCCG
TACCAGCCTGAGCACAGCCCTGAGTAGCGGACTGGAGAGGCTCAAAACTGTCACATCTGGTGGCATCCAG
TCTGTGCTTCCAGCGTCCCAGCTTGGCTCAAGTGTGGACACCAAGAGGCCAAAGGATTCTGCTGTGCTGG
ACCAGTCGGCCAAGTACTATCACCTGACTCATGATGAGCTCATTGGCCTGCTCCTGCAGCGTGAGCGTGA
GCTGAGCCAGAGAGACGAGCATGTGCAAGAACTGGAGAGCTACATTGACCGGCTGCTGGTGCGGATCATG
GAGACCTCGCCCACACTGCTGCAAATCTCCCCTGGCCCCCCCAAGTAG

Translation (645 aa):
MALVRDPEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTSDAYTVIQVGREKYSTSVVEKTQGCPEWC
EECSFELPPGALDGLLRAQEADAGPAPWASGPNAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRA
QHTQWYRLHSKPGKKEKERGEIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDRVKGKKKYDLESASA
ILPSSALEDPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLTRSPS
HSSWLSTEGGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRSSLCVNGSHVYNEEPQP
PLRHRSSISGPFPPSSSLHSVPPRSSEEGSRSSDDSWGRGSHGTSSSEAVPGQEELSKQAKGASCSGEEE
GARLPEGKPVQVATPMVASSEAVAAEKDRKPRMGLFHHHHHQGLSRSEQGRRGSVGEKGSPSLGASPHHS
STGEEKAKSSWFGLRESKEPTQKPSPHPVKPLTAAPVEASPDRKQPRTSLSTALSSGLERLKTVTSGGIQ
SVLPASQLGSSVDTKRPKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESYIDRLLVRIM
ETSPTLLQISPGPPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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