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Report for CCDS58442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58442.1 Public Homo sapiens 16 APOBR 24 110 108 CCDS HistoryNCBI Gene:55911Re-query CCDS DB by CCDS ID:58442.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000564831.6 ENSP00000457539.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000564831.6Link to Ensembl Protein Viewer:ENSP00000457539.1Re-query CCDS DB by Nucleotide ID:ENST00000564831Re-query CCDS DB by Protein ID:ENSP00000457539
Original member Current member NCBI NM_018690.4 NP_061160.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018690.4Link to Protein Sequence:NP_061160.3Re-query CCDS DB by Nucleotide ID:NM_018690Re-query CCDS DB by Protein ID:NP_061160Link to BLAST:NP_061160.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061160.3 1097 Q0VD83-4 1097 100% 0 0

Chromosomal Locations for CCDS 58442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28494682 28494738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28495099 28497996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28498081 28498349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28498436 28498505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3294 nt):
ATGGACTTCCTCCGGCTATACCTCCCTGGGCTGCACCAGGCCTTGAGGGGGGCACTGGATTCCCTCGGCA
CCTTTGTCTCCTACCTCCTGGGAGATGCAGTCCCCACTGTAGAGCGGGAGGCGCAGGCGGCTGAGGAACT
GGGGGTGGTGGCGGTGGGAAAGACAGGGAAGATTGTAGAGGAGGAAGCCCAGGAGGACCTGGAGGGCCTT
AGAGGCAGCCAAAACGAGGGGGCTGGAAGGCTGAGAGGGCCTGGAGATGACAGAAGACATGAAGTGGGGA
GCTCAGCTGTAGAACAGACCTGGGGCTGGGGAGATGGCAGCTCCCATGGGTCCCAAGCAGAGAGGCAGGA
CAGTGGGGCTGGGGAGACAGCCAAGGCTGCCAGGTGCCAGGAGCCAAGCGCCCACTTGGAGGCCAGAAAG
AAATCCAAGGCAGGGTCTGGGGCTTGCCAAGACAGGAGCGGCCAAGCCCAGGAGAGGCAGGAGTCCCATG
AGCAGGAAGTGAACAGAGAAGAGAGGCTGAGAAGCTGGGAACAGGAGGAGGAGGAGGAAGAGGTCAGGGC
AAGAGAGCCAGGGATGGCCAGAGGGGCGGAGTCAGAGTGGACCTGGCATGGGGAGACGGAGGGGAAGGCT
GGTGCTGTTGGGCCAAAGGCGGCAGGGGACAACCGGGAGATGGAGCAGGGGGTCAGGGAGGCAGATGCAG
GGGAAACTGAGGAGCCTGGGGCCGAAGGGGCTGGGAAAGGAGAAGAGGTGGTAGTGGTGGAGAAGGCCTG
TGAAAGCACTAGGGCATGGGGGACGTGGGGCCCAGGGGCAGAGCCTGAGGACTGGGGAATCTTAGGCAGA
GAGGAGGCCAGGACAACCCCAGGTAGGGAAGAGGCCAGGGCAATTTTAGATGGGGAGGAAGCCAGGACAA
TCTCAGGCGGGGAGGAGGCTGAGACAGCCTCAGGCGGGGAGGAGGCTGAAACAGCCTCAGGCGGGGAGGA
GGCCGGGACAGCCTCGGGAGGGGAGGAGGCCGGGATAGCCTCAGGCGGGGAGGCTGGGACAGCCTCAGGA
GGGGAGGAGGCCGGGACAGCCTCAGGAGGGGAGGAGGCCGGGACAGCCTCAGGAGGGGACGAGGCCTGGA
CAACCTCAGGCAAAGAGGAGGCTGACCTGCTGGGAGTCAGACAGACAGAATATGGAGCAGTCCCAGGAGA
AAGGCTCCTAGAGGCTACTGGAAAAGTCTGGGTCCTAGAGGAGGAGGGGGATGAGGAGAGAGAGGCTGAG
GTGAGCCCTTTCCCCAAACAGCCCCAGGTCCTGGGCACTGAAAGAACAGAAGAGGCTGCTGAGAGCCAGA
CCGCAGGGAGGGAAGCTGTGGGAGGCCAGGAGGCAGGGGAGAGCTTTGAGGGCCAGGTAGACCTGCGTGG
TAAGGAGGCTGAGATGAGGCAGGACTTGGGGATCAGGGCCGACCGGGCCAGGATGGAAGAGCTGGTACAG
GCAGAGGAGGCCCAGGAGGAGAGAGGGAGCAGCAGGGATCCAGTGGCTGAGCTGCCCTCAGATGGAGAGG
CTGAAGGCACTGCCGACTTGGAGGCAACTCCAGAGGCCAGGCCTGAGGAGGAGCTCACAGGGGAGGAGAG
TGAGGCGGCCCAGACTAGCTGTGGCCTACTGGGCGTGGAATGGGGTGGCCTCACACACAGCGTCACCAAA
GGCCAAGGACCTGAGCTGATGGGGGGCGCCCAGACCCCAACTAAGCAACCCGAGGAAAGGGAGGCAGGGG
AGGTGGAGCTCATGGGAGTTCTGGCCCTGAGCAAAGAGGAGCAGGAGAGGAGCCTGGAGGCAGGTCCCAG
GCACGCGGGGTCTGTAAAGCCTGAGGCCTCCGAGGCCTTCCCAGGAGCCTGGGAAAACCGCACGAGAAAG
GACATGGAGAGAGGAAATACTCAGGAGGATGCGGCCGATGGCGAGCAGCGGGAGGAGGAGGAGACTGCGG
GAGGCCAGACCCTGGCGGCTGAGGCTGAAGGAGACCGAGAGTCTGAACTATCAGAAGTCCCAGAGGCAGG
CGGGGAGGGGCTGACAACCCAGGACGCGGGATGTGGAACTGAGGAGGGAGAGGCATCTGTCTCAGAGAAC
CAGGAGCTGGACGGAAGCACAGGGGCAGACGCAGGGCCTTGCCCGTCACTGGGAGAGGCCTATGCCAGAG
AAACTGAGGATGAGGAGGCGGAGGCTGACAGAACATCCAGAAGAGGCTGGAGGCTGCAAGCGGTGGCTGT
GGGCCTCCCGGACCGTGAGGATGCACAGACTGGCTCTGTGGCTGCTGGGATTATGGGGGGTGATGTGGTC
CCACACATCAGCGCTGCTGGCGCTGGTGAAGCTTTGGAAGGGGTGCTTGGGCAAGGCTGGGACTCGAAAG
AAAAGGAAGAGGCAGCAGCAGGAGAGCATGCAGGTGGGCAAGAATTTGGTCTGGAGGGCTCAGCAGAGGA
AGAGGTGACTGGCAGAGGCAGCCAAGTAGAGGCTTTTGAGTCCAGGGAGGGAGGACCTTGGGGAGGGCGG
GTAGAGGCCGAGGAATCTGCAGGCGCAGAGGACAGCTGTGGGCTGGATCCCGCGGGCTCCCAGACAGCGA
GGGCAGAGGGGATGGGAGCCATGGTGGAGGCTGGGGGGCTTCTAGAAAAGTGGACGCTGTTGGAAGAAGA
GGCTGTTGGATGGCAGGAGAGAGAACAGAGGGAAGACAGTGAGGGGCGGTGTGGGGACTACCACCCTGAG
GGAGAGGCACCAAGGCTCCTTGATGCAGAGGGTCTCATGGTGACCGGGGGCCGGAGGGCAGAGGCCAAGG
AGACTGAGCCAGAAAGCCTGGAACATGTCAGGGGCCAGGAGGAGCAGCCAACACACCAGGCCCCTGCAGA
AGCTGCGCCGGAGTCAGTCGGGGAAGCCGAGACGGCTGAGGCCATGGGCAGTGCCAGAGGAGGTGCTGCC
AACAGCTGGAGCGAGGCCCCGCTCCCCGGGTCCCTCCTAGACGTCTCTGTCCCAAGGAGTCGCGTGCACC
TCTCGAGAAGCTCCTCACAGCGTCGCTCCCGGCCCTCTTTTCGTCGGACTCCGGCCTGGGAGCAGCAGGA
GGAGCCCCCAGCCCCCAACCCTCCTGAGGAGGAGCTGTCAGCTCCTGAGCAGAGACCCCTCCAGCTGGAG
GAACCCCTGGAGCCAAGCCCTCTGAGGCATGATGGGACCCCGGTGCCAGCCAGGAGAAGGCCCCTGGGAC
ACGGGTTTGGCCTCGCGCACCCTGGCATGATGCAGGAGCTGCAAGCCCGTCTGGGCCGGCCTAAGCCCCA
GTGA

Translation (1097 aa):
MDFLRLYLPGLHQALRGALDSLGTFVSYLLGDAVPTVEREAQAAEELGVVAVGKTGKIVEEEAQEDLEGL
RGSQNEGAGRLRGPGDDRRHEVGSSAVEQTWGWGDGSSHGSQAERQDSGAGETAKAARCQEPSAHLEARK
KSKAGSGACQDRSGQAQERQESHEQEVNREERLRSWEQEEEEEEVRAREPGMARGAESEWTWHGETEGKA
GAVGPKAAGDNREMEQGVREADAGETEEPGAEGAGKGEEVVVVEKACESTRAWGTWGPGAEPEDWGILGR
EEARTTPGREEARAILDGEEARTISGGEEAETASGGEEAETASGGEEAGTASGGEEAGIASGGEAGTASG
GEEAGTASGGEEAGTASGGDEAWTTSGKEEADLLGVRQTEYGAVPGERLLEATGKVWVLEEEGDEEREAE
VSPFPKQPQVLGTERTEEAAESQTAGREAVGGQEAGESFEGQVDLRGKEAEMRQDLGIRADRARMEELVQ
AEEAQEERGSSRDPVAELPSDGEAEGTADLEATPEARPEEELTGEESEAAQTSCGLLGVEWGGLTHSVTK
GQGPELMGGAQTPTKQPEEREAGEVELMGVLALSKEEQERSLEAGPRHAGSVKPEASEAFPGAWENRTRK
DMERGNTQEDAADGEQREEEETAGGQTLAAEAEGDRESELSEVPEAGGEGLTTQDAGCGTEEGEASVSEN
QELDGSTGADAGPCPSLGEAYARETEDEEAEADRTSRRGWRLQAVAVGLPDREDAQTGSVAAGIMGGDVV
PHISAAGAGEALEGVLGQGWDSKEKEEAAAGEHAGGQEFGLEGSAEEEVTGRGSQVEAFESREGGPWGGR
VEAEESAGAEDSCGLDPAGSQTARAEGMGAMVEAGGLLEKWTLLEEEAVGWQEREQREDSEGRCGDYHPE
GEAPRLLDAEGLMVTGGRRAEAKETEPESLEHVRGQEEQPTHQAPAEAAPESVGEAETAEAMGSARGGAA
NSWSEAPLPGSLLDVSVPRSRVHLSRSSSQRRSRPSFRRTPAWEQQEEPPAPNPPEEELSAPEQRPLQLE
EPLEPSPLRHDGTPVPARRRPLGHGFGLAHPGMMQELQARLGRPKPQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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