NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50883.1 Public Mus musculus 3 Gpr160 23 108 98 CCDS HistoryNCBI Gene:71862Re-query CCDS DB by CCDS ID:50883.1Re-query CCDS DB by GeneID:71862See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046748.12 ENSMUSP00000045165.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046748.12Link to Ensembl Protein Viewer:ENSMUSP00000045165.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046748Re-query CCDS DB by Protein ID:ENSMUSP00000045165
Original member Current member EBI ENSMUST00000108258.7 ENSMUSP00000103893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108258.7Link to Ensembl Protein Viewer:ENSMUSP00000103893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108258Re-query CCDS DB by Protein ID:ENSMUSP00000103893
Original member Current member EBI ENSMUST00000108259.7 ENSMUSP00000103894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108259.7Link to Ensembl Protein Viewer:ENSMUSP00000103894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108259Re-query CCDS DB by Protein ID:ENSMUSP00000103894
Original member Current member EBI ENSMUST00000108261.7 ENSMUSP00000103896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108261.7Link to Ensembl Protein Viewer:ENSMUSP00000103896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108261Re-query CCDS DB by Protein ID:ENSMUSP00000103896
Original member Current member EBI ENSMUST00000166278.6 ENSMUSP00000128666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166278.6Link to Ensembl Protein Viewer:ENSMUSP00000128666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166278Re-query CCDS DB by Protein ID:ENSMUSP00000128666
Original member Current member NCBI NM_001134385.2 NP_001127857.1 Accepted alive Link to Nucleotide Sequence:NM_001134385.2Link to Protein Sequence:NP_001127857.1Re-query CCDS DB by Nucleotide ID:NM_001134385Re-query CCDS DB by Protein ID:NP_001127857Link to BLAST:NP_001127857.1
Original member Current member NCBI NM_001134386.2 NP_001127858.1 Accepted alive Link to Nucleotide Sequence:NM_001134386.2Link to Protein Sequence:NP_001127858.1Re-query CCDS DB by Nucleotide ID:NM_001134386Re-query CCDS DB by Protein ID:NP_001127858Link to BLAST:NP_001127858.1
Original member Current member NCBI NM_001286994.1 NP_001273923.1 Accepted alive Link to Nucleotide Sequence:NM_001286994.1Link to Protein Sequence:NP_001273923.1Re-query CCDS DB by Nucleotide ID:NM_001286994Re-query CCDS DB by Protein ID:NP_001273923Link to BLAST:NP_001273923.1
Original member Current member NCBI NM_001286995.1 NP_001273924.1 Accepted alive Link to Nucleotide Sequence:NM_001286995.1Link to Protein Sequence:NP_001273924.1Re-query CCDS DB by Nucleotide ID:NM_001286995Re-query CCDS DB by Protein ID:NP_001273924Link to BLAST:NP_001273924.1
Original member Current member NCBI NM_001286996.1 NP_001273925.1 Accepted alive Link to Nucleotide Sequence:NM_001286996.1Link to Protein Sequence:NP_001273925.1Re-query CCDS DB by Nucleotide ID:NM_001286996Re-query CCDS DB by Protein ID:NP_001273925Link to BLAST:NP_001273925.1
Original member Current member NCBI NM_001357144.1 NP_001344073.1 Accepted alive Link to Nucleotide Sequence:NM_001357144.1Link to Protein Sequence:NP_001344073.1Re-query CCDS DB by Nucleotide ID:NM_001357144Re-query CCDS DB by Protein ID:NP_001344073Link to BLAST:NP_001344073.1
Original member Current member NCBI NM_027965.2 NP_082241.1 Accepted alive Link to Nucleotide Sequence:NM_027965.2Link to Protein Sequence:NP_082241.1Re-query CCDS DB by Nucleotide ID:NM_027965Re-query CCDS DB by Protein ID:NP_082241Link to BLAST:NP_082241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127857.1 336 Q3U3F9 336 100% 0 0
NP_001127858.1 336 Q3U3F9 336 100% 0 0
NP_001273923.1 336 Q3U3F9 336 100% 0 0
NP_001273924.1 336 Q3U3F9 336 100% 0 0
NP_001273925.1 336 Q3U3F9 336 100% 0 0
NP_001344073.1 336 Q3U3F9 336 100% 0 0
NP_082241.1 336 Q3U3F9 336 100% 0 0

Chromosomal Locations for CCDS 50883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30895781 30896791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGACAGCTCTTTCTTCAAAGAACTGCTCTCTTCAATACCAGCTCCATCAGTCTCCGCAGCTCCTGGAGG
CCTCCTGTCTGTTGTTCTTGATCATCCTGGGGAAAGTGTTATTAAACATCCTCCTTCTAAGAGTGAGAAG
GGGAGACGCCCGCTGGACTTTGATGGAGTACTTCTGCTTCTCACTCGCACTTGTCGATCTCCTGCTGTTG
GTAAACATTTCCATCCTGACCTACTTCAGGGACTTTGTAGTTCTAGGTATTAGGTTTACCAGATACCACA
TCTGTCTGCTCACACAAATTATTTCCTTCACTTATGGCTTCTTGCATTACCCAGTCTGCTCACTGGCTTG
TATAGACTACTGGTGTAATCTGTCCAGAGCCAGCAAGCAGTCATCTAGGTGGCAGAAATTACTTTATTTC
TTGACAGTCATTTTAACTTGGATCTCAGTCCTTGCTTACGTTTTGGTTGACCCGGCCATCTCAGTCAGCC
TAAAGGCACACAGGGGCTATGTGTACCAGTGCCCCGCCTATGTCAGCACTCAGAGTCACTGGCTCTCACT
GTCTATGCTGATGGTTTTATTTGTGGCTTTTCTGATTTCATGGCAGGAAGTTGTTGCCTTGCTTCAGGCT
ATGAGGATAGCATCCTATAAGAGCAAGGCCGCCCTCTACTTTCCTTTCCCACTCCACTGCGGTTACGCCC
TGAGCTGCAGAGAAGCACTCTTGCCCAGGCTCATCGTGTGCTTTCTTGGGACCTGGTTTCCCTTTGTAGC
ACTTCAGGTCCTCATCCTCTCCCTCAGAGTTCAGATCCCGGCGTACATAGAAATGAACGTCCCCTGGCTG
TACTTTGTCAACAGTTTCCTCATCGCTGCAGTTTATTGGTTTAACTGCCACAAGCTTGATTTAAGAGACA
GCTCGTTACCTGTGGATCCTTTCATCAACTGGAAATGCTGCTTTGTTCCAGTCCATAGACTTAAGCAAGT
GGAGAGGCCCATGTCCATAGTCATCTGTTAG

Translation (336 aa):
MTALSSKNCSLQYQLHQSPQLLEASCLLFLIILGKVLLNILLLRVRRGDARWTLMEYFCFSLALVDLLLL
VNISILTYFRDFVVLGIRFTRYHICLLTQIISFTYGFLHYPVCSLACIDYWCNLSRASKQSSRWQKLLYF
LTVILTWISVLAYVLVDPAISVSLKAHRGYVYQCPAYVSTQSHWLSLSMLMVLFVAFLISWQEVVALLQA
MRIASYKSKAALYFPFPLHCGYALSCREALLPRLIVCFLGTWFPFVALQVLILSLRVQIPAYIEMNVPWL
YFVNSFLIAAVYWFNCHKLDLRDSSLPVDPFINWKCCFVPVHRLKQVERPMSIVIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH