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Report for CCDS39446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39446.1 Public Mus musculus 6 Fscn3 23 108 98 CCDS HistoryNCBI Gene:56223Re-query CCDS DB by CCDS ID:39446.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031719.6 ENSMUSP00000031719.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031719.6Link to Ensembl Protein Viewer:ENSMUSP00000031719.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031719Re-query CCDS DB by Protein ID:ENSMUSP00000031719
Original member NCBI NM_019569.2 NP_062515.2 Updated not alive Link to Nucleotide Sequence:NM_019569.2Link to Protein Sequence:NP_062515.2Re-query CCDS DB by Nucleotide ID:NM_019569Re-query CCDS DB by Protein ID:NP_062515
Current member NCBI NM_019569.3 NP_062515.2 Accepted alive Link to Nucleotide Sequence:NM_019569.3Link to Protein Sequence:NP_062515.2Re-query CCDS DB by Nucleotide ID:NM_019569Re-query CCDS DB by Protein ID:NP_062515Link to BLAST:NP_062515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062515.2 498 Q9QXW4 498 100% 0 0

Chromosomal Locations for CCDS 39446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28428016 28428159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28429977 28430673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28431513 28431631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28434388 28434547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28435500 28435670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28435998 28436203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGCTGAGGTGGACTGGATACACAGACATCCAAAGGCGGAGGACCTAAGGGTTGGGCTCATCAGCTGGG
CAGGAACCTACCTCACCTTTGAAGCATATAAGAGTTCAGTCACAGCTTCTGCAAAGAGTTTGGGCAGGAG
ACAGACCTGGGAGCTCCTGGTGAGCAATGAACATGAATCACAGGCTGTGATACGACTAAAGAGCTTGCAG
GGCCTCTACCTGCTGTGCGAAGCAGATGGTACTGTGTGCTATGGCAGGCCAAGAACTAGTCACCACGGAT
GCTTCCTGCTCCGCTTCCACCGAAACGGCAAATGGACCCTCCAGTGCATCATCTCTGGTCGCTATCTTGA
GTCCGATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTCCCAGGCCA
GCCTTGCATGTCCACGTGATCCTCTACAGCCCCATCTACCACAGCTATGCCCGAGCAGACCACACTGTGG
GCCGAATCTGGGTAGACGCAGCAATCCCCTGCCTAGAGGAATGTGGTTTCCTGTTACATTTCCAAGATGG
ATGTTACCATCTGGAGACTTCTACACACCATTTCTTGTCTCGAGTAGACCGTCTGGTCCCTCAACGCTCA
TCACAGACAGCTTTTCACATGCAAGTACGGCCTCGAGGACTCGTGGCCCTATGTGATGGAGAAGGCGGCA
CATTGTATCCGCAGGGTTCACATCTTCTACTGGGCATGGGCTCTGCTCCCATGAAGGGCGAGGAGTGGTT
TGTCCTACAGCACTTCCCGACCTGGGTCAGCCTGAAGTCCAAGTCTCGGAGGTTCCTCTCAGTCATCTAT
GATGCTGAGGTGTGTGCTGCTTCTGAGCGTTTGACCCAGATGTCCTTGTTCCAGTACGAATGTGACAGTG
AGACTCCTACCTTGCAACTTCGTTCAGCCAATGGCTACTACCTAGCTCAGAGGAGGCATCGGGCAATCAT
CGCTGACGGACACCCCATGGAGTCTGACACCTTCTTCCGAGTGCACTGGAATTGTGGGAAAATCACCCTG
CAGTCCCCCAATGGGCGGTTCCTGGGCATAGCCTCTGATGGCCTGCTAATGGCAAATGTCACCATCCCAG
GCCCTAACGAGGAGCTGGGGATTCGATTTGCCAATCGCCCCTTTCTCGTCTTACGCGGTCGATATGGGTA
TGTGGGCTCCTCCTCCGACCACGACCTGCTGAAGTGCAACATGGATCAACCTGACTGTATTCAGCTATTG
CCCTGTCGCCAGGGCATCTATCACTTTCAGGCACAGGGTGGATCCTTCTGGTCAATAACATCCTTTGGCA
CCTTCCGCCCTTGGGGAAAATTTGCCCTCAACTTCTGCATAGAACTACAGGGGAGCAGCTTGCTCACGGT
GCTGGCACCCAATGGCTTCTACCTCCGAGCCGACCGGAGTGGCACACTATTGGCAGACAGTGAAGAAATT
ACCAAAGAATGTATCTGGGAATTTTAG

Translation (498 aa):
MAEVDWIHRHPKAEDLRVGLISWAGTYLTFEAYKSSVTASAKSLGRRQTWELLVSNEHESQAVIRLKSLQ
GLYLLCEADGTVCYGRPRTSHHGCFLLRFHRNGKWTLQCIISGRYLESDGEDVFCNSRVLSAYHMWTPRP
ALHVHVILYSPIYHSYARADHTVGRIWVDAAIPCLEECGFLLHFQDGCYHLETSTHHFLSRVDRLVPQRS
SQTAFHMQVRPRGLVALCDGEGGTLYPQGSHLLLGMGSAPMKGEEWFVLQHFPTWVSLKSKSRRFLSVIY
DAEVCAASERLTQMSLFQYECDSETPTLQLRSANGYYLAQRRHRAIIADGHPMESDTFFRVHWNCGKITL
QSPNGRFLGIASDGLLMANVTIPGPNEELGIRFANRPFLVLRGRYGYVGSSSDHDLLKCNMDQPDCIQLL
PCRQGIYHFQAQGGSFWSITSFGTFRPWGKFALNFCIELQGSSLLTVLAPNGFYLRADRSGTLLADSEEI
TKECIWEF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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