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Report for CCDS42919.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42919.2 Public Homo sapiens 21 EPCIP 24 110 108 CCDS HistoryNCBI Gene:56245Re-query CCDS DB by CCDS ID:42919.2See the combined annotation on chromosome 21 in Sequence Viewer

Public Note for CCDS 42919.1
The coding region has been updated to correct an indel in the CDS, which results in a shorter protein C-terminus that is better supported by transcript and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42919.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487113.1 ENSP00000418511.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487113.1Link to Ensembl Protein Viewer:ENSP00000418511.1Re-query CCDS DB by Nucleotide ID:ENST00000487113Re-query CCDS DB by Protein ID:ENSP00000418511
Original member Current member EBI ENST00000479548.2 ENSP00000418653.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000479548.2Link to Ensembl Protein Viewer:ENSP00000418653.1Re-query CCDS DB by Nucleotide ID:ENST00000479548Re-query CCDS DB by Protein ID:ENSP00000418653
Original member Current member EBI ENST00000490358.5 ENSP00000418830.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490358.5Link to Ensembl Protein Viewer:ENSP00000418830.1Re-query CCDS DB by Nucleotide ID:ENST00000490358Re-query CCDS DB by Protein ID:ENSP00000418830
Original member Current member NCBI NM_001162495.3 NP_001155967.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162495.3Link to Protein Sequence:NP_001155967.2Re-query CCDS DB by Nucleotide ID:NM_001162495Re-query CCDS DB by Protein ID:NP_001155967Link to BLAST:NP_001155967.2
Original member Current member NCBI NM_001162496.3 NP_001155968.2 Accepted alive Link to Nucleotide Sequence:NM_001162496.3Link to Protein Sequence:NP_001155968.2Re-query CCDS DB by Nucleotide ID:NM_001162496Re-query CCDS DB by Protein ID:NP_001155968Link to BLAST:NP_001155968.2
Original member Current member NCBI NM_019596.6 NP_062542.5 Accepted alive Link to Nucleotide Sequence:NM_019596.6Link to Protein Sequence:NP_062542.5Re-query CCDS DB by Nucleotide ID:NM_019596Re-query CCDS DB by Protein ID:NP_062542Link to BLAST:NP_062542.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155967.2 219 Q9NYP8 219 100% 0 0
NP_001155968.2 219 Q9NYP8 219 100% 0 0
NP_062542.5 219 Q9NYP8 219 100% 0 0

Chromosomal Locations for CCDS 42919.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 32793762 32794421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGCACCACCTTCCAGGCACTGTCTTCTTCTGATCAGCACTCTGGGTGTCTTTGCACTTAACTGCTTCA
CCAAAGGTCAGAAGAACAGCACGCTCATCTTCACAAGGGAAAACACCATTCGGAACTGCAGCTGTTCTGC
GGACATCCGGGATTGTGACTACAGTTTGGCCAACCTGATGTGCAACTGTAAAACCGTCCTGCCCCTTGCA
GTAGAGCGAACCAGCTACAATGGCCATCTGACCATCTGGTTCACGGACACATCTGCGCTGGGCCACCTGC
TGAACTTCACGCTGGTCCAAGACCTGAAGCTTTCCCTGTGCAGCACCAACACTCTCCCCACTGAATACCT
GGCTATTTGTGGTCTGAAGAGGCTGCGCATCAACATGGAGGCCAAGCATCCCTTCCCAGAGCAGAGCTTA
CTCATCCATAGCGGTGGGGACAGTGACTCCAGAGAGAAGCCCATGTGGTTACACAAAGGCTGGCAGCCAT
GTATGTATATCTCATTCTTAGATATGGCTCTTTTCAACAGGGACTCAGCCTTAAAATCATATAGTATTGA
AAACGTTACCAGCATTGCCAACAACTTTCCTGACTTTTCTTACTTTAGAACCTTCCCAATGCCAAGCAAC
AAAAGCTATGTTGTCACATTTATTTACTAG

Translation (219 aa):
MAPPSRHCLLLISTLGVFALNCFTKGQKNSTLIFTRENTIRNCSCSADIRDCDYSLANLMCNCKTVLPLA
VERTSYNGHLTIWFTDTSALGHLLNFTLVQDLKLSLCSTNTLPTEYLAICGLKRLRINMEAKHPFPEQSL
LIHSGGDSDSREKPMWLHKGWQPCMYISFLDMALFNRDSALKSYSIENVTSIANNFPDFSYFRTFPMPSN
KSYVVTFIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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