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Report for CCDS30397.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
30397.1 |
Public |
Mus musculus |
X |
Hnrnph2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:56258](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:30397.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 30397.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000059297.5 |
ENSMUSP00000050838.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000059297.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000050838.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000059297](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000050838](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000074950.10 |
ENSMUSP00000074483.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000074950.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000074483.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000074950](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000074483](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000050331.12 |
ENSMUSP00000108827.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000050331.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108827.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000050331](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108827](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000113202.7 |
ENSMUSP00000108828.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000113202.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108828.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000113202](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108828](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000113203.1 |
ENSMUSP00000108829.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000113203.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000108829.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000113203](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000108829](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001313716.1 |
NP_001300645.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001313716.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001300645.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001313716](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001300645](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001300645.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001313717.1 |
NP_001300646.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001313717.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001300646.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001313717](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001300646](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001300646.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_019868.4 |
NP_063921.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_019868.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_063921.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_019868](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_063921](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_063921.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 30397.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1350 nt): ATGATGCTGAGCACAGAGGGCAGGGAGGGGTTCGTGGTGAAGGTCAGGGGCCTACCCTGGTCCTGCTCAG CCGAGGAAGTGATGCGCTTCTTCTCTGATTGCAAAATCCAAAATGGCACATCAGGTGTTCGTTTCATCTA CACCAGAGAAGGCAGACCGAGTGGTGAAGCATTTGTCGAACTTGAATCTGAAGATGAAGTGAAATTGGCT TTAAAGAAAGACAGAGAAACCATGGGACACAGATATGTTGAAGTATTCAAATCCAACAGTGTTGAAATGG ATTGGGTGTTAAAGCATACAGGTCCAAATAGTCCTGATACTGCCAATGATGGTTTTGTACGACTCAGAGG ACTCCCATTTGGCTGTAGCAAGGAAGAAATTGTTCAGTTCTTTTCAGGGTTGGAAATTGTGCCAAATGGG ATGACACTGCCAGTGGACTTTCAGGGGCGGAGCACAGGGGAAGCTTTTGTGCAGTTTGCTTCACAGGAGA TAGCTGAGAAGGCCTTAAAGAAACACAAGGAAAGAATAGGGCATAGGTACATCGAAATCTTCAAGAGTAG CCGAGCTGAAGTCCGAACCCACTATGATCCACCTAGAAAGCTCATGACTATGCAGCGCCCGGGTCCTTAC GATAGGCCAGGGGCTGGAAGAGGGTATAATAGCATTGGCAGAGGAGCCGGGTTTGAAAGAATGAGGCGGG GTGCCTATGGTGGAGGGTATGGAGGCTATGATGACTATGGAGGTTATAATGACGGGTATGGTTTTGGGTC TGATAGATTTGGAAGAGACCTAAACTACTGTTTCTCAGGAATGTCTGATCATAGATATGGAGATGGTGGG TCCAGTTTCCAGAGCACCACGGGGCACTGTGTACATATGAGGGGGTTACCATACAGAGCCACCGAGAATG ATATTTACAATTTTTTCTCACCTCTTAATCCCATGAGAGTGCACATTGAAATAGGACCTGATGGAAGAGT TACTGGTGAGGCAGATGTTGAGTTTGCTACTCATGAAGACGCTGTGGCAGCTATGGCAAAAGATAAAGCA AATATGCAACACAGATATGTGGAGCTCTTCTTGAATTCTACCGCAGGGACAAGTGGAGGAGCTTATGATC ATAGCTATGTAGAGCTCTTTTTGAATTCTACAGCAGGGGCAAGTGGTGGTGCTTACGGTAGCCAGATGAT GGGAGGGATGGGTTTATCCAACCAGTCTAGTTATGGAGGTCCGGCCAGCCAGCAGCTGAGTGGTGGCTAT GGAGGGGGTTATGGTGGTCAGAGCAGTATGAGTGGATATGACCAAGTTCTTCAGGAAAACTCAAGTGACT ATCAGTCAAACCTTGCTTAG
Translation (449 aa): MMLSTEGREGFVVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLA LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPY DRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGG SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA NMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY GGGYGGQSSMSGYDQVLQENSSDYQSNLA
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