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Report for CCDS18429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18429.1 Public Mus musculus 4 Mrpl37 23 108 98 CCDS HistoryNCBI Gene:56280Re-query CCDS DB by CCDS ID:18429.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030365.5 ENSMUSP00000030365.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030365.5Link to Ensembl Protein Viewer:ENSMUSP00000030365.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030365Re-query CCDS DB by Protein ID:ENSMUSP00000030365
Original member NCBI NM_025500.2 NP_079776.1 Updated not alive Link to Nucleotide Sequence:NM_025500.2Link to Protein Sequence:NP_079776.1Re-query CCDS DB by Nucleotide ID:NM_025500Re-query CCDS DB by Protein ID:NP_079776
Current member NCBI NM_025500.3 NP_079776.1 Accepted alive Link to Nucleotide Sequence:NM_025500.3Link to Protein Sequence:NP_079776.1Re-query CCDS DB by Nucleotide ID:NM_025500Re-query CCDS DB by Protein ID:NP_079776Link to BLAST:NP_079776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079776.1 423 Q921S7 423 100% 0 0

Chromosomal Locations for CCDS 18429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107056027 107056104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107057372 107057575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107060483 107060640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107061883 107062068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107064385 107064500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107064587 107064770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107066450 107066795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCCTTGGCGTCCGGGCCCGCTCTGCGGGCACTCGCTGGCTCTGGAAGGCTCGGCCTCGGAGGTTACG
GGACTCCGAAACGTGGGGCGTATGAGTGGGGCGTGCGCTCCACGCGGAAGCCCGAGCCTCGCCCCCTGGA
CAGGGTGTACGAGATCCCCGGTCTGGAGCCCATTACCTACGAGGGCAAGAAGCACTTCGTCCCGTGGCTG
GCGAGGCCGATCTTCCCGCCGTGGGAGCGCGGCTGGAATGACCCACGCTTCCACCGTGCCGCCCCGATCC
ACGAACAGACTCTGTACAAGGAAGAACCCTGCTACATCTTCCACCAGCGTTGCCGACTCCTGGAGGGGAT
GAAGCAGGCTCTCTGGCTTACTAAGACCAAGTTAATAGAAGGCCTCCCCAAGAAAGTGCTTAGTCTTGTT
GATGATCCAGCTAATCACATAGAGAACCAAGAACAGCGTGTTTTGGATATCATCTCCCATGCCCGGCTTT
GGCACTCCACTGAGGACATCCCCAAGAGAGAGACTTACTGCCCACTCATTGTGGACAGCCTCATACAGCT
GTGTAAATCCCAGATTCTCAAGCACCCTTCTCTAGCCAGGCGGACCTCTGCCCAAAACTGCACCTTAGCC
ACCACCTGGAACCGCGAGTCTCTTCTCCTTCAGGTCCGAGGTACTAGTAGTACCATACTGAGTGCCAAGG
ATCCCCTGCCCGTCATTGCCTCCAGGGAGGAGGTTGAAGCTACCAGAAGTCATGTTCTTGAAACCTTCTA
TCCCATATCTCCTACCATCGATCTTCAAGAATGCCACGTTTATGAAGTGAAAGATGACACAGGGTTCCAG
GAGGGCTATCCTTACCCCCATCCCCACACCTTGTATTTCCTGGAAAAGGCCAATTTACGGCCACAACGCT
TTCTTCCAGAACAACTAAGGGCTAAGATGCTCCTGTTTGCTTTCGCAAATGCCCTGGCCCAGGCCAGGCT
CCTCTATGGGAACACAGCCAAAGTCTTGGAGCAGCCAATAGTCGTGCAGAGCGTGGGCACTGATGGCCGT
GTCTTCCAGTTCCTGGTGCTGCAGTTGAACACCACAGATCTGGCTTCTAGCGAGGGCGTCAAGAATTTGG
TATGGACAGACTCAGACCAGCTCCTTTACCGGCACTTCTGGTGTCGCCCAGTCATCAAAAAAAAGGTGGT
GGTGGAACCTGTTGGGCCTGTTGATTTCCAGCCGGAGACGTTCAGGAAGTTTTTAGCTCTGTACTTGCAT
GGTGTTGTGTGA

Translation (423 aa):
MALASGPALRALAGSGRLGLGGYGTPKRGAYEWGVRSTRKPEPRPLDRVYEIPGLEPITYEGKKHFVPWL
ARPIFPPWERGWNDPRFHRAAPIHEQTLYKEEPCYIFHQRCRLLEGMKQALWLTKTKLIEGLPKKVLSLV
DDPANHIENQEQRVLDIISHARLWHSTEDIPKRETYCPLIVDSLIQLCKSQILKHPSLARRTSAQNCTLA
TTWNRESLLLQVRGTSSTILSAKDPLPVIASREEVEATRSHVLETFYPISPTIDLQECHVYEVKDDTGFQ
EGYPYPHPHTLYFLEKANLRPQRFLPEQLRAKMLLFAFANALAQARLLYGNTAKVLEQPIVVQSVGTDGR
VFQFLVLQLNTTDLASSEGVKNLVWTDSDQLLYRHFWCRPVIKKKVVVEPVGPVDFQPETFRKFLALYLH
GVV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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