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Report for CCDS30108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30108.1 Public Mus musculus X Elf4 23 108 98 CCDS HistoryNCBI Gene:56501Re-query CCDS DB by CCDS ID:30108.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033429.8 ENSMUSP00000033429.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033429.8Link to Ensembl Protein Viewer:ENSMUSP00000033429.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033429Re-query CCDS DB by Protein ID:ENSMUSP00000033429
Original member Current member EBI ENSMUST00000114958.7 ENSMUSP00000110608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114958.7Link to Ensembl Protein Viewer:ENSMUSP00000110608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114958Re-query CCDS DB by Protein ID:ENSMUSP00000110608
Original member Current member NCBI NM_019680.2 NP_062654.2 Accepted alive Link to Nucleotide Sequence:NM_019680.2Link to Protein Sequence:NP_062654.2Re-query CCDS DB by Nucleotide ID:NM_019680Re-query CCDS DB by Protein ID:NP_062654Link to BLAST:NP_062654.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062654.2 655 Q9Z2U4 655 100% 0 0

Chromosomal Locations for CCDS 30108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48414663 48415446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48416647 48417024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48417871 48418063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48418155 48418238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48419008 48419199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48420276 48420368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48420704 48420875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48424078 48424149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGCTATTGCTCTGCAGCCCAGTGATCTGGTCTTCGAGTTTGCAAGCAACGGGATGGATGATATCCACC
AGCTGGAAGACCCTTCAGTGTTCCCAGCCGTGATCGTGGAACAGGTCCCCTATCCTGAATTAGTGCATCT
GTGCTCAGGACTGGATCTGGATGAGGTCCACAATGGCATCATAAGGGACAGGACCTTGTGCATGACACAG
GATCAGATTTTAGAAGGCAGTATTTTGCTGACAGATGATGATGTATCCACCTCAAATAACGTGTCATCCA
CTGAAGTCCTATTCAATGTGGCAACTCCCAGTGATGTCCTGGATGAGAAGCAGATCTTCAGCTCACCGGA
AGTGCTTTCAGACTCCAACTCTGTTCAGGCCATCAATCTACCCAACTTCCTGCTCTCTACCCCTGAACCT
GATGACCTGAAGAAGACAAGTGATGCTGGTGACCAGAAGGAGCATTCTGAGGAGGAGAAGGTCTCCAGAG
AGGAAAATCTTAGGAAGATGGGGAAGGCACGGAAGAGAAACCGAAAGACCAAGAACAACCGAAGTACCTC
ACCTGTCACTGACCCTAGCATGCCTATACGGAAGAAATCCAAAGATGGCAAAGGCAGCACCATTTATCTG
TGGGAGTTCCTCCTGGCTCTTCTGCAAGACAGAAACACCTGCCCCAAGTACATTAAGTGGACGCAGAGAG
AGAAGGGCATCTTCAAGTTGGTGGACTCCAAGGCTGTGTCCAAGCTGTGGGGCAAGCAGAAAAACAAACC
TGACATGAACTACGAGACCATGGGGCGAGCCCTGAGATATTATTATCAAAGAGGAATCCTGGCCAAAGTG
GAAGGGCAGAGGCTGGTATACCAGTTCAAGGAGATGCCTAAGGACTTGGTGGTGATTGATGATGAAGAAG
AGAGCCCTGAGACACCAGAAGACTCTTCCCAGGCCTCGACTTCCTCCACACCCTCGACCAGTACCATCCG
GAGAGCCAGCTCCAGGGTCGGAACCAGAGCCTCCCCCGAGGACAAGGATAACCCTCCCTGGGAGAAGCCA
AAAGTCCAACACACTGGTCTCCAGCCATCTGCAAGCCTGGAGTTAGGATTGTCTGTGGATGAGGAGGTTC
CCACCACCTCCACCATGCTTGCCAGCCCACTACAGAGCCAGGCCAGGCTCACCAAAACTGTGAGTTCTTC
TCCAGCACCCAGTAACATCCACCTAGGAGTAGCCCCTGTGGGGCCTGGCTCCACTGTCACCCTGCAGACC
ATCCCGCTGACTACGGTGCTGACCAATGGGCCTCCTGCCAGTACTACTGCTCCAACTCAACTCGTTCTTC
AGAGTGTCCCGCAGGTGTCAACATTCAAGGACACCTTCACTTTGCAGACCTCCTTCCCCCTGAACACCAA
TTTGCAAGAGAACCAGGTGGCAACCCAAGGGGCCCCACTGATCCTCAGTGGTCTCCCCCAACTTCTGGCT
GGGGCCAACCCTCAGAGCAACCCAGCTCCATCCCAGGTCATAGGTGCTGGGTCAGCAGGGCCTAGCTCTC
AGCCCCCTGGGACTGTGATTGCTGCCTTTATCAGGACTTCCAGTGGCACATCAGTGCCTGTGGTAAAGGA
GGGGCCCTTGAGGTCCTCTTCATATGTGCAGGGTGTGGTTACTGGGGCACCCGTGGAGGGGCTGTTGGTT
CCTGAAGAGACCCTGAGAGAGCTCCTGAGAGATCAGGGTCATCTTCAGCCACTTCCGAGTCAGGTGCTCT
CAAGGGGTTCCCATAACCTGAGCCTTGTGGGGAACCAGACTCTCTCTCCCCCTAGCCACCCCACTGTTGG
GCTAACCCCAGTGGCTGAGCTCGAGCTCTCGTCAGGCTCAGGGCCCCTGTTCGTAACTGAGCCTAGTGTG
ACCAGATCCCCAACCCAGGCCCCTTTCTCCCCATTCAATCCCACTTCCCTCATTAAGATGGAACCCCAAG
ATATATAA

Translation (655 aa):
MAIALQPSDLVFEFASNGMDDIHQLEDPSVFPAVIVEQVPYPELVHLCSGLDLDEVHNGIIRDRTLCMTQ
DQILEGSILLTDDDVSTSNNVSSTEVLFNVATPSDVLDEKQIFSSPEVLSDSNSVQAINLPNFLLSTPEP
DDLKKTSDAGDQKEHSEEEKVSREENLRKMGKARKRNRKTKNNRSTSPVTDPSMPIRKKSKDGKGSTIYL
WEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQKNKPDMNYETMGRALRYYYQRGILAKV
EGQRLVYQFKEMPKDLVVIDDEEESPETPEDSSQASTSSTPSTSTIRRASSRVGTRASPEDKDNPPWEKP
KVQHTGLQPSASLELGLSVDEEVPTTSTMLASPLQSQARLTKTVSSSPAPSNIHLGVAPVGPGSTVTLQT
IPLTTVLTNGPPASTTAPTQLVLQSVPQVSTFKDTFTLQTSFPLNTNLQENQVATQGAPLILSGLPQLLA
GANPQSNPAPSQVIGAGSAGPSSQPPGTVIAAFIRTSSGTSVPVVKEGPLRSSSYVQGVVTGAPVEGLLV
PEETLRELLRDQGHLQPLPSQVLSRGSHNLSLVGNQTLSPPSHPTVGLTPVAELELSSGSGPLFVTEPSV
TRSPTQAPFSPFNPTSLIKMEPQDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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