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Report for CCDS27862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27862.1 Public Mus musculus 15 Krt71 23 108 98 CCDS HistoryNCBI Gene:56735Re-query CCDS DB by CCDS ID:27862.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023710.5 ENSMUSP00000023710.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023710.5Link to Ensembl Protein Viewer:ENSMUSP00000023710.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023710Re-query CCDS DB by Protein ID:ENSMUSP00000023710
Original member Current member NCBI NM_019956.1 NP_064340.1 Accepted alive Link to Nucleotide Sequence:NM_019956.1Link to Protein Sequence:NP_064340.1Re-query CCDS DB by Nucleotide ID:NM_019956Re-query CCDS DB by Protein ID:NP_064340Link to BLAST:NP_064340.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064340.1 524 Q9R0H5 524 100% 0 0

Chromosomal Locations for CCDS 27862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101734497 101734708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101735439 101735473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101736547 101736767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101737946 101738071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101738291 101738455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101738769 101738864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101739264 101739324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101740250 101740464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101742603 101743046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGAGCCGCCAATTCACCTGCAAGTCTGGAGCCAGCAACAGGGGCTTCAGTGGTTGCTCCGCAGTGCTCT
CTGGGGGAAGCTCATCCTCCTACCGGGCAGGAGGCAAAGGGCTCAGCGGGGGCTTTGGCAGTCGGAGTCT
CTACAGCCTGGGAGGTGGCAGGAGCATCACTCTTAACATGGCTAGTGGCAGCGGGAAGAACGGAGGTTTT
GGATTTGGCCGGAACCGAGCCAGTGGCTTTGCCGGAAGTATCTTTGGCAGTGTGGCCCTGGGGCCCGTGT
GCCCTGCTGTGTGCCCGCCTGGCGGTATCCATCAGGTCACAGTCAATGAAAGCCTTCTGGCCCCACTCAA
TGTGGAGCTGGACCCTGAGATCCAGAAGGTGCGCGCACAGGAGCGGGAGCAGATCAAGGCTCTGAACAAC
AAGTTTGCCTCCTTCATTGACAAGGTGCGCTTCTTGGAGCAGCAGAACCAGGTGCTGCAGACCAAGTGGG
AGCTGCTGCAGCAGCTGGACCTGAACAACTGCAAGAACAACCTGGAACCCATCCTTGAGGGCCACATCAG
CAACATGCGGAAGCAGCTGGAGACGCTGTCTGGGGACAGAGTGAGGCTGGACTCTGAGCTGAGGAATGTG
CGTGACGTGGTGGAGGACTACAAGAAGAAGTATGAGGAGGAGATCAACCGGCGGACAGCTGCAGAGAATG
AGTTTGTGCTGCTGAAGAAGGACGTGGATGCGGCTTATGCCAACAAGGTGGAACTGCAGGCCAAGGTGGA
CACCATGGACCAGGACATCAAATTCTTCAAGTGTCTGTTCGAAGCCGAGATGGCTCAGATCCAGTCCCAC
ATCAGCGACATGTCCGTCATCCTGTCCATGGACAACAACAGGAACCTGGACCTGGACAGCATCATCGATG
AGGTTCGCGCTCAGTATGAGGAGATTGCCCTGAAGAGCAAGGCTGAAGCTGAGGCCCTGTACCAGACCAA
GTTCCAGGAGCTGCAGCTGGCAGCTGGTCGCCATGGAGATGACCTCAAAAACACCAAAAATGAAATCACT
GAGCTGACCCGGTTCATCCAGAGACTCCGCTCAGAGATTGAGAACGCAAAGAAGCAGGCTTCTAACCTAG
AGACAGCCATCGCTGATGCCGAGCAGCGAGGTGACAGTGCCCTCAAGGATGCCCGGGCCAAGCTGGATGA
GCTGGAGGGTGCCCTGCACCAGGCCAAGGAGGAGCTGGCCAGGATGCTGCGTGAATATCAGGAGCTCATG
AGCCTAAAGTTGGCCCTGGACATGGAGATCGCCACCTACCGCAAACTTCTGGAGAGCGAGGAGTGCAGGA
TGTCCGGAGAATACTCTTCCCCCGTCAGCATCTCCATTATCAGCAGCACCAGTGGCAGTGGAGGCTATGG
CTTCCGGCCCAGCACAGTCAGCGGTGGCTACGTGGCCAATAGCACTAGCTGCATCTCTGGAGTGTGCAGT
GTCCGTGGTGGGGAGAACAGGAGCAGAGGTAGTGCCAGCGACTACAAGGATACCCTAACAAAGGGCTCCA
GTCTGAGCACCCCCTCCAAGAAAGGTGGCCGATGA

Translation (524 aa):
MSRQFTCKSGASNRGFSGCSAVLSGGSSSSYRAGGKGLSGGFGSRSLYSLGGGRSITLNMASGSGKNGGF
GFGRNRASGFAGSIFGSVALGPVCPAVCPPGGIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNN
KFASFIDKVRFLEQQNQVLQTKWELLQQLDLNNCKNNLEPILEGHISNMRKQLETLSGDRVRLDSELRNV
RDVVEDYKKKYEEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDTMDQDIKFFKCLFEAEMAQIQSH
ISDMSVILSMDNNRNLDLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQELQLAAGRHGDDLKNTKNEIT
ELTRFIQRLRSEIENAKKQASNLETAIADAEQRGDSALKDARAKLDELEGALHQAKEELARMLREYQELM
SLKLALDMEIATYRKLLESEECRMSGEYSSPVSISIISSTSGSGGYGFRPSTVSGGYVANSTSCISGVCS
VRGGENRSRGSASDYKDTLTKGSSLSTPSKKGGR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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