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Report for CCDS23643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23643.1 Public Mus musculus 9 Pomgnt2 23 108 98 CCDS HistoryNCBI Gene:215494Re-query CCDS DB by CCDS ID:23643.1Re-query CCDS DB by GeneID:215494See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084743.6 ENSMUSP00000095868.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084743.6Link to Ensembl Protein Viewer:ENSMUSP00000095868.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084743Re-query CCDS DB by Protein ID:ENSMUSP00000095868
Original member Current member EBI ENSMUST00000216669.1 ENSMUSP00000149077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216669.1Link to Ensembl Protein Viewer:ENSMUSP00000149077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216669Re-query CCDS DB by Protein ID:ENSMUSP00000149077
Original member Current member EBI ENSMUST00000217610.1 ENSMUSP00000149753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217610.1Link to Ensembl Protein Viewer:ENSMUSP00000149753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217610Re-query CCDS DB by Protein ID:ENSMUSP00000149753
Original member NCBI NM_001289558.1 NP_001276487.1 Updated not alive Link to Nucleotide Sequence:NM_001289558.1Link to Protein Sequence:NP_001276487.1Re-query CCDS DB by Nucleotide ID:NM_001289558Re-query CCDS DB by Protein ID:NP_001276487
Current member NCBI NM_001289558.2 NP_001276487.1 Accepted alive Link to Nucleotide Sequence:NM_001289558.2Link to Protein Sequence:NP_001276487.1Re-query CCDS DB by Nucleotide ID:NM_001289558Re-query CCDS DB by Protein ID:NP_001276487Link to BLAST:NP_001276487.1
Original member NCBI NM_001289559.1 NP_001276488.1 Updated not alive Link to Nucleotide Sequence:NM_001289559.1Link to Protein Sequence:NP_001276488.1Re-query CCDS DB by Nucleotide ID:NM_001289559Re-query CCDS DB by Protein ID:NP_001276488
Current member NCBI NM_001289559.2 NP_001276488.1 Accepted alive Link to Nucleotide Sequence:NM_001289559.2Link to Protein Sequence:NP_001276488.1Re-query CCDS DB by Nucleotide ID:NM_001289559Re-query CCDS DB by Protein ID:NP_001276488Link to BLAST:NP_001276488.1
Original member NCBI NM_001289560.1 NP_001276489.1 Updated not alive Link to Nucleotide Sequence:NM_001289560.1Link to Protein Sequence:NP_001276489.1Re-query CCDS DB by Nucleotide ID:NM_001289560Re-query CCDS DB by Protein ID:NP_001276489
Current member NCBI NM_001289560.2 NP_001276489.1 Accepted alive Link to Nucleotide Sequence:NM_001289560.2Link to Protein Sequence:NP_001276489.1Re-query CCDS DB by Nucleotide ID:NM_001289560Re-query CCDS DB by Protein ID:NP_001276489Link to BLAST:NP_001276489.1
Original member NCBI NM_153540.4 NP_705768.4 Updated not alive Link to Nucleotide Sequence:NM_153540.4Link to Protein Sequence:NP_705768.4Re-query CCDS DB by Nucleotide ID:NM_153540Re-query CCDS DB by Protein ID:NP_705768
Current member NCBI NM_153540.5 NP_705768.4 Accepted alive Link to Nucleotide Sequence:NM_153540.5Link to Protein Sequence:NP_705768.4Re-query CCDS DB by Nucleotide ID:NM_153540Re-query CCDS DB by Protein ID:NP_705768Link to BLAST:NP_705768.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276487.1 580 Q8BW41 580 100% 0 0
NP_001276488.1 580 Q8BW41 580 100% 0 0
NP_001276489.1 580 Q8BW41 580 100% 0 0
NP_705768.4 580 Q8BW41 580 100% 0 0

Chromosomal Locations for CCDS 23643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 121981971 121983713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGCACCTCTCTGCCGTATTCAACGCCCTCCTGGTATCAGTGCTGGCTGCGGTCCTGTGGAAGCATGTTC
GGTTGCGGGAGCATGCGGCCACGCTAGAGGAGGAGCTGGCCCTTGGACAGCAGTCCCTGGATCCAGTCCT
AGGACTGAAGATCGACTACCCGAAGGCCCTGCAGATCCTCATGGAGGGCGGCACCCACATGGTGTGCACA
GGCCGCACCCACACGGACCGCATCTGCCGCTTCAAGTGGCTCTGCTACTCCAATGAGGCCGAAGAATTCA
TCTTTTTCCATGGCAACTCATCTGTGATGCTGCCCAACCTGGGCTCCCGGCGCTTCCAGCCGGCCCTGCT
GGACCTGTCCACTGTGGAGGACCATAATGCCCAGTACTTCAACTTCGTGGAGCTGCCCGCTGCAGCCCTG
CGCTTCATGCCAAAGCCAGTGTTCGTGCCTGATGTAGCCCTCATCGCCAACCGCTTCAACCCCGATAACC
TCATGCACGTCTTTCATGATGACCTGCTCCCACTCTTCTACACACTGAGGCAGTTCCCCGGCCTGGCCCA
AGAGGCCCGGCTCTTTTTCATGGAGGGATGGGGTGAGGGTGCCCACTTTGACCTCTATAAACTCCTCAGC
CCCAAGCAGCCGCTTCTACGTGCACAGCTCAAGACACTGGGCCGACTGCTCTGCTTTTCCCATGCTTTCG
TGGGCCTGTCCAAGGTTACCACCTGGTACCAATACGGCTTTGTACAGCCCCAGGGCCCAAAAGCCAACAT
CCTGGTCTCTGGCAATGAGATCCGGCAGTTCACGCGCTTCATGACTGAAAGGCTGAACGTGAGCCACGCG
GGGGCGCCCCTGGGGGAGGAATACATTCTGGTCTTCAGTCGCACCCAGAACAGACTCATCCTGAACGAGG
CAGAGCTGTTGCTGGAGCTGGCACAAGAGTTCCAGATGAAGACGGTTACAGTGTCCCTGGAGGACCACAC
CTTTGCTGATGTCGTGCGGCTGGTCAGCAATGCCTCCATGTTGGTCAGCATGCATGGGGCCCAGCTGGTT
ACGGCCCTCTTCCTGCCCCGCGGGGCTACCGTGGTTGAACTCTTCCCTTACGCTGTCAATCCTGACCACT
ACACCCCCTATAAGACGCTGGCCACACTGCCTGGCATGGACCTGCAGTATGTAGCCTGGCGAAACATGAT
CCGGGAGAACACAGTCACACACCCTGAGCGACCGTGGGACCAAGGGGGCATCACCCACCTGGACCGGGCT
GAGCAGGCCCGTATCCTGCAGAGCCGAGAGGTCCCCCGGCATCTCTGTTGCCGGAACCCAGAGTGGCTAT
TCCGAATCTACCAGGACACCAGGGTGGACATCCCATCCCTTATGCAATCCATTCGGCGTGTGGTGAAGGG
CCGGCCGGGGCCACGGAGGCAGAGGTGGGCAATCAGCCTGTACCCGGGCAAGGTGCGGGAGGCTCGATGT
CAGGCGTCAGTGCAGGGTGCCACCGAGGCCCGCCTGTCTGTGTCCTGGCAGATCCCGTGGAACCTCAAGT
ACCTGAAAGTGAGGGAGGTGAAATACGAGGTGTGGCTGCAGGAGCAAGGGGAGAACACGTATGTGCCTTA
CATGCTGACCCTGCAGAACCACACCTTCACAGAGAACATCAAACCTTTTACCACCTACCTGGTGTGGGTC
CGCTGTATATTTAACAGGAGCCTCCTGGGACCTTTTGCAGATGTGCTGGTGTGCAGCACGTAG

Translation (580 aa):
MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALGQQSLDPVLGLKIDYPKALQILMEGGTHMVCT
GRTHTDRICRFKWLCYSNEAEEFIFFHGNSSVMLPNLGSRRFQPALLDLSTVEDHNAQYFNFVELPAAAL
RFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLRQFPGLAQEARLFFMEGWGEGAHFDLYKLLS
PKQPLLRAQLKTLGRLLCFSHAFVGLSKVTTWYQYGFVQPQGPKANILVSGNEIRQFTRFMTERLNVSHA
GAPLGEEYILVFSRTQNRLILNEAELLLELAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLV
TALFLPRGATVVELFPYAVNPDHYTPYKTLATLPGMDLQYVAWRNMIRENTVTHPERPWDQGGITHLDRA
EQARILQSREVPRHLCCRNPEWLFRIYQDTRVDIPSLMQSIRRVVKGRPGPRRQRWAISLYPGKVREARC
QASVQGATEARLSVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYMLTLQNHTFTENIKPFTTYLVWV
RCIFNRSLLGPFADVLVCST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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