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Report for CCDS31470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31470.1 Public Homo sapiens 11 SYT13 24 110 108 CCDS HistoryNCBI Gene:57586Re-query CCDS DB by CCDS ID:31470.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000020926.8 ENSP00000020926.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000020926.8Link to Ensembl Protein Viewer:ENSP00000020926.3Re-query CCDS DB by Nucleotide ID:ENST00000020926Re-query CCDS DB by Protein ID:ENSP00000020926
Original member Current member NCBI NM_020826.3 NP_065877.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020826.3Link to Protein Sequence:NP_065877.1Re-query CCDS DB by Nucleotide ID:NM_020826Re-query CCDS DB by Protein ID:NP_065877Link to BLAST:NP_065877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065877.1 426 Q7L8C5 426 100% 0 0

Chromosomal Locations for CCDS 31470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45244052 45244356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45246383 45246512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45252421 45252722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45254270 45254404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45255666 45255891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45286025 45286207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGTGCTGTCGGTGCCTGTGATCGCGCTGGGCGCCACGCTGGGCACAGCCACCAGCATCCTCGCGTTGT
GCGGGGTCACCTGCCTGTGTCGGCACATGCACCCCAAGAAGGGGCTGCTGCCGCGGGACCAGGACCCCGA
CCTGGAGAAGGCGAAGCCCAGCTTGCTCGGGTCTGCACAACAGTTCAATGTTAAAAAGTCCACGGAACCT
GTTCAGCCCCGTGCCCTCCTCAAGTTCCCAGACATCTATGGACCCAGGCCAGCTGTGACGGCTCCAGAGG
TCATCAACTATGCAGACTATTCACTGAGGTCTACGGAGGAGCCCACTGCACCTGCCAGCCCCCAACCCCC
GAATGACAGTCGCCTCAAGAGGCAGGTCACAGAGGAGCTGTTCATCCTCCCTCAGAATGGTGTGGTGGAG
GATGTCTGTGTCATGGAGACCTGGAACCCAGAGAAGGCTGCCAGTTGGAACCAGGCCCCCAAACTCCACT
ACTGCCTGGACTATGACTGTCAGAAGGCAGAATTGTTTGTGACTCGCCTGGAAGCTGTGACCAGCAACCA
CGACGGAGGCTGTGACTGCTACGTCCAAGGGAGTGTGGCCAATAGGACCGGCTCTGTGGAGGCTCAGACA
GCCCTAAAGAAGCGGCAGCTGCACACCACCTGGGAGGAGGGCCTGGTGCTCCCCCTGGCGGAGGAGGAGC
TCCCCACAGCCACCCTGACGCTGACCTTGAGGACCTGCGACCGCTTCTCCCGTCACAGCGTGGCCGGGGA
GCTCCGCCTGGGCCTGGACGGGACATCTGTGCCTCTAGGGGCTGCCCAGTGGGGCGAGCTGAAGACTTCA
GCGAAGGAGCCATCTGCAGGAGCTGGAGAGGTCCTACTATCCATCAGCTACCTCCCGGCTGCCAACCGCC
TCCTGGTGGTGCTGATTAAAGCCAAGAACCTCCACTCTAACCAGTCCAAGGAGCTCCTGGGGAAGGATGT
CTCTGTCAAGGTGACCTTGAAGCACCAGGCTCGGAAGCTGAAGAAGAAGCAGACTAAACGAGCTAAGCAC
AAGATCAACCCCGTGTGGAACGAGATGATCATGTTTGAGCTGCCTGACGACCTGCTGCAGGCCTCCAGTG
TGGAGCTGGAAGTGCTGGGCCAGGACGATTCAGGGCAGAGCTGTGCGCTTGGCCACTGCAGCCTGGGCCT
GCACACCTCGGGCTCTGAGCGCAGCCACTGGGAGGAGATGCTCAAAAACCCTCGCCGGCAGATTGCCATG
TGGCACCAGCTGCACCTGTAA

Translation (426 aa):
MVLSVPVIALGATLGTATSILALCGVTCLCRHMHPKKGLLPRDQDPDLEKAKPSLLGSAQQFNVKKSTEP
VQPRALLKFPDIYGPRPAVTAPEVINYADYSLRSTEEPTAPASPQPPNDSRLKRQVTEELFILPQNGVVE
DVCVMETWNPEKAASWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT
ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS
AKEPSAGAGEVLLSISYLPAANRLLVVLIKAKNLHSNQSKELLGKDVSVKVTLKHQARKLKKKQTKRAKH
KINPVWNEMIMFELPDDLLQASSVELEVLGQDDSGQSCALGHCSLGLHTSGSERSHWEEMLKNPRRQIAM
WHQLHL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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