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Report for CCDS15071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15071.1 Public Mus musculus 1 Des 23 108 98 CCDS HistoryNCBI Gene:13346Re-query CCDS DB by CCDS ID:15071.1Re-query CCDS DB by GeneID:13346See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027409.9 ENSMUSP00000027409.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027409.9Link to Ensembl Protein Viewer:ENSMUSP00000027409.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000027409Re-query CCDS DB by Protein ID:ENSMUSP00000027409
Original member Current member NCBI NM_010043.2 NP_034173.1 Accepted alive Link to Nucleotide Sequence:NM_010043.2Link to Protein Sequence:NP_034173.1Re-query CCDS DB by Nucleotide ID:NM_010043Re-query CCDS DB by Protein ID:NP_034173Link to BLAST:NP_034173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034173.1 469 P31001 469 100% 0 0

Chromosomal Locations for CCDS 15071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75360418 75360992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75362158 75362218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75362313 75362408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75362565 75362726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75362894 75363019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75363471 75363691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75365328 75365371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75366760 75366842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75367009 75367050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGAGCCAGGCCTACTCGTCCAGCCAGCGCGTGTCCTCCTACCGCCGCACCTTCGGCGGCGCCCCGGGCT
TCTCTCTGGGCTCCCCGCTGAGCTCTCCCGTGTTCCCTCGAGCAGGCTTCGGTACCAAGGGCTCCTCGAG
TTCAATGACATCCCGCGTGTACCAGGTGTCGCGCACGTCGGGCGGGGCTGGAGGCTTGGGGTCGCTGCGG
TCTAGCCGGCTGGGGACCACCCGAGCGCCATCCTATGGCGCGGGCGAGCTGCTGGACTTCTCCCTGGCCG
ACGCTGTGAACCAGGAGTTCCTGGCCACGCGCACCAACGAGAAGGTGGAGCTGCAAGAGCTCAATGACCG
CTTCGCCAACTACATCGAGAAGGTGCGCTTCTTGGAGCAGCAGAACGCCGCGCTCGCCGCCGAGGTCAAC
CGGCTCAAGGGCCGCGAACCGACTCGGGTCGCCGAGCTCTACGAGGAGGAGATGCGCGAGCTGCGGCGCC
AGGTGGAGGTGCTCACCAACCAGCGCGCCCGGGTCGACGTGGAGCGTGACAACCTGATAGACGACCTGCA
GAGGCTCAAGGCCAAACTACAGGAGGAAATCCAACTAAGAGAAGAAGCAGAGAACAACTTGGCTGCCTTC
CGAGCGGATGTGGATGCAGCCACTCTAGCTCGTATTGACCTGGAGCGCAGAATCGAATCCCTCAACGAGG
AGATCGCGTTCCTTAAGAAAGTGCATGAAGAGGAGATCCGTGAGCTTCAGGCCCAGCTTCAGGAACAGCA
GGTCCAGGTGGAGATGGACATGTCCAAGCCGGACCTCACAGCTGCCCTCAGGGACATCCGGGCTCAGTAT
GAGACCATCGCGGCTAAGAACATCTCTGAGGCTGAAGAATGGTACAAGTCCAAGGTTTCAGACTTGACTC
AGGCAGCCAATAAGAACAACGATGCGCTGCGCCAAGCCAAGCAGGAGATGATGGAATACCGACACCAGAT
CCAGTCCTACACCTGCGAGATTGATGCCCTCAAGGGCACCAACGACTCCCTGATGAGGCAGATGAGGGAG
CTGGAGGATCGCTTTGCCAGCGAGGCCAATGGCTATCAGGACAACATTGCGCGCCTGGAGGAGGAGATCC
GACACCTAAAGGATGAGATGGCCCGCCATCTGCGCGAGTACCAGGACCTGCTCAATGTGAAGATGGCCTT
GGATGTGGAGATCGCCACCTACCGGAAGCTACTGGAGGGCGAGGAGAGCAGGATCAACCTTCCTATCCAG
ACCTTCTCTGCTCTCAACTTCCGAGAAACCAGCCCCGAGCAAAGGGGTTCTGAAGTCCATACCAAAAAGA
CAGTGATGATCAAGACCATTGAGACCCGGGATGGAGAGGTTGTCAGCGAGGCTACACAGCAACAACATGA
AGTGCTGTAA

Translation (469 aa):
MSQAYSSSQRVSSYRRTFGGAPGFSLGSPLSSPVFPRAGFGTKGSSSSMTSRVYQVSRTSGGAGGLGSLR
SSRLGTTRAPSYGAGELLDFSLADAVNQEFLATRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVN
RLKGREPTRVAELYEEEMRELRRQVEVLTNQRARVDVERDNLIDDLQRLKAKLQEEIQLREEAENNLAAF
RADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQY
ETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRE
LEDRFASEANGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQ
TFSALNFRETSPEQRGSEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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