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Report for CCDS19608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19608.1 Public Mus musculus 5 Tesc 23 108 98 CCDS HistoryNCBI Gene:57816Re-query CCDS DB by CCDS ID:19608.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031304.13 ENSMUSP00000031304.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031304.13Link to Ensembl Protein Viewer:ENSMUSP00000031304.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031304Re-query CCDS DB by Protein ID:ENSMUSP00000031304
Original member Current member NCBI NM_021344.4 NP_067319.2 Accepted alive Link to Nucleotide Sequence:NM_021344.4Link to Protein Sequence:NP_067319.2Re-query CCDS DB by Nucleotide ID:NM_021344Re-query CCDS DB by Protein ID:NP_067319Link to BLAST:NP_067319.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067319.2 214 Q9JKL5 214 100% 0 0

Chromosomal Locations for CCDS 19608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 118027930 118027987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118046315 118046384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118053584 118053664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118054830 118054969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118056377 118056438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118056537 118056644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118059442 118059489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118061602 118061679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGGCGCTGCCCACTCGGCGTCCGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCTTCTCCTCGGACC
AGATAGAGCAGCTGCATCGGAGGTTCAAGCAGCTAAGCGGGGACCAGCCCACCATTCGCAAGGAGAACTT
CAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCCGTGCCTTCTTCGACAACAGG
AACCTGCGAAAGGGATCCAGCGGTCTGGCCGATGAGATCAACTTTGAGGACTTCCTGACTATCATGTCCT
ACTTCCGGCCCATCGACACCACCCTGGGCGAGGAACAGGTGGAGCTGTCACGAAAGGAGAAGCTGAAATT
TCTGTTTCATATGTATGATTCGGACAGTGACGGCCGCATCACCCTGGAAGAGTATAGAAATGTGGTGGAG
GAGCTGCTCTCGGGAAACCCTCACATTGAAAAGGAGTCGGCTCGGTCCATTGCAGACGGGGCCATGATGG
AGGCGGCCAGCGTGTGCGTGGGGCAGATGGAACCGGACCAGGTGTACGAGGGGATCACCTTTGAGGACTT
CCTGAAGATCTGGCAGGGCATCGACATCGAGACCAAGATGCACATTCGTTTCCTCAACATGGAGACCATC
GCCCTCTGCCACTGA

Translation (214 aa):
MGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLSGDQPTIRKENFNNVPDLELNPIRSKIVRAFFDNR
NLRKGSSGLADEINFEDFLTIMSYFRPIDTTLGEEQVELSRKEKLKFLFHMYDSDSDGRITLEEYRNVVE
ELLSGNPHIEKESARSIADGAMMEAASVCVGQMEPDQVYEGITFEDFLKIWQGIDIETKMHIRFLNMETI
ALCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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