NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45920.1 Public Homo sapiens 19 CACTIN 24 110 108 CCDS HistoryNCBI Gene:58509Re-query CCDS DB by CCDS ID:45920.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221899.7 ENSP00000221899.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000221899.7Link to Ensembl Protein Viewer:ENSP00000221899.4Re-query CCDS DB by Nucleotide ID:ENST00000221899Re-query CCDS DB by Protein ID:ENSP00000221899
Original member Current member EBI ENST00000248420.9 ENSP00000248420.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000248420.9Link to Ensembl Protein Viewer:ENSP00000248420.5Re-query CCDS DB by Nucleotide ID:ENST00000248420Re-query CCDS DB by Protein ID:ENSP00000248420
Original member Current member EBI ENST00000429344.7 ENSP00000415078.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429344.7Link to Ensembl Protein Viewer:ENSP00000415078.1Re-query CCDS DB by Nucleotide ID:ENST00000429344Re-query CCDS DB by Protein ID:ENSP00000415078
Original member Current member EBI ENST00000585942.5 ENSP00000465751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000585942.5Link to Ensembl Protein Viewer:ENSP00000465751.1Re-query CCDS DB by Nucleotide ID:ENST00000585942Re-query CCDS DB by Protein ID:ENSP00000465751
Original member Current member NCBI NM_001080543.2 NP_001074012.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080543.2Link to Protein Sequence:NP_001074012.1Re-query CCDS DB by Nucleotide ID:NM_001080543Re-query CCDS DB by Protein ID:NP_001074012Link to BLAST:NP_001074012.1
Original member Current member NCBI NM_021231.2 NP_067054.1 Accepted alive Link to Nucleotide Sequence:NM_021231.2Link to Protein Sequence:NP_067054.1Re-query CCDS DB by Nucleotide ID:NM_021231Re-query CCDS DB by Protein ID:NP_067054Link to BLAST:NP_067054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074012.1 758 Q8WUQ7-1 758 100% 0 0
NP_067054.1 758 Q8WUQ7-1 758 100% 0 0

Chromosomal Locations for CCDS 45920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3611923 3612413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3613058 3613365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3613464 3613586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3614397 3614589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3618875 3618989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3619080 3619242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3620127 3620272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3620707 3620802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3623688 3624162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3626596 3626762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGGGTCGGGACACACGCTCGCGCTCGCGGTCCGCGGGTCGCCGGGGCCGAAGGCGGCAGAGTCAGAGCG
GGAGCCGAAGTCGGAGCAGGAGCCATGGGCGGCGAAACCGACGGCGCCGGGAGGACGAGGGACGGCGCAG
ACGGAGGCGGCGGAGCCGGGAGCGCAGGTCAGATTCAGAGGAAGAGCGGTGGCAGCGCTCAGGGATGCGA
AGCCGGAGCCCCCCGCGGCCCAAGTGGCACTCAAGAGATGGGTCCTCTCAGTCGGACTCAGGAGAGGAGC
AGTCACGGGGCCAGTGGGCTCGCCGGCGACGGCGCGCACGCTCGTGGTCTCCTAGCTCCTCAGCATCCAG
CTCCGCGTCTCCAGGGCGATCCCAGAGCCCCCGGGCGGCCGCGGCTGCCCTGAGCCAGCAGCAGAGCCTG
CAGGAGCGGCTGCGGCTGCGGGAGGAGCGGAAGCAGCAGGAGGAGCTGATGAAGGCCTTCGAGACGCCCG
AGGAGAAGCGCGCACGGCGGCTGGCCAAGAAGGAGGCCAAGGAGCGCAAGAAGCGGGAGAAGATGGGCTG
GGGTGAGGAGTACATGGGCTACACCAACACCGACAACCCCTTCGGAGACAACAACCTGCTGGGCACCTTC
ATCTGGAATAAGGCCCTGGAGAAGAAGGGGATCAGCCACCTGGAGGAGAAGGAGCTGAAGGAGCGGAACA
AGAGGATCCAGGAGGACAACCGGCTGGAGCTGCAGAAGGTGAAGCAGCTGCGGCTGGAGCGGGAGCGGGA
GAAGGCCATGCGCGAGCAGGAGCTGGAGATGCTGCAGCGCGAGAAGGAGGCAGAGCACTTCAAGACATGG
GAGGAGCAGGAGGACAACTTCCACCTCCAGCAGGCCAAGCTGCGTTCCAAGATCCGCATCCGGGACGGGC
GGGCCAAGCCCATCGACCTGCTGGCCAAGTACATCAGCGCTGAGGATGACGATCTGGCCGTGGAGATGCA
TGAGCCCTACACGTTCCTCAACGGCCTCACCGTGGCCGACATGGAGGACCTGCTGGAGGATATCCAGGTC
TACATGGAGCTGGAGCAGGGCAAGAACGCCGACTTCTGGCGGGACATGACCACCATCACCGAGGACGAGA
TCTCCAAGCTCCGCAAGCTGGAGGCCTCGGGCAAGGGGCCAGGTGAGCGCCGCGAGGGGGTCAACGCCTC
CGTCAGCTCTGATGTGCAGTCGGTGTTCAAGGGGAAGACATACAACCAGCTGCAGGTCATCTTCCAGGGC
ATCGAGGGCAAAATCCGCGCTGGTGGCCCCAACCTGGACATGGGCTACTGGGAGAGCCTCCTGCAGCAGC
TTCGTGCCCACATGGCACGGGCCCGGCTGCGTGAGCGCCACCAGGACGTGCTGCGGCAGAAGCTGTACAA
ACTGAAGCAGGAGCAGGGCGTGGAGAGCGAGCCGCTGTTCCCCATCCTCAAGCAGGAGCCCCAGTCCCCC
AGCCGCAGCCTGGAGCCTGAGGACGCGGCGCCCACCCCGCCCGGGCCCTCCTCGGAGGGCGGCCCCGCGG
AGGCCGAGGTGGACGGCGCGACCCCGACAGAGGGCGACGGCGACGGGGACGGTGAGGGCGAGGGCGAGGG
CGAGGCGGTGCTCATGGAGGAGGACCTGATCCAGCAGAGCCTGGACGACTACGACGCCGGCAGGTACAGC
CCGCGGCTGCTCACGGCGCACGAGCTGCCACTGGACGCGCACGTGCTGGAACCGGATGAGGACCTGCAGC
GCCTGCAGCTCTCGCGCCAGCAGCTCCAGGTCACGGGAGACGCCAGCGAGAGCGCCGAGGACATCTTCTT
CCGGCGGGCCAAGGAGGGCATGGGCCAGGACGAGGCGCAGTTCAGCGTGGAGATGCCACTCACCGGCAAG
GCCTACCTGTGGGCCGACAAGTACCGGCCACGCAAGCCGCGCTTCTTCAACCGCGTGCACACGGGCTTCG
AGTGGAACAAGTACAACCAGACGCACTACGACTTTGACAACCCACCGCCCAAGATCGTGCAGGGATACAA
GTTCAACATCTTCTACCCCGACCTCATCGACAAGCGCTCCACGCCCGAGTACTTCCTGGAGGCCTGCGCC
GACAACAAGGATTTCGCCATCCTGCGCTTCCACGCGGGGCCGCCCTACGAGGACATCGCTTTCAAGATCG
TCAACCGCGAGTGGGAATACTCGCACCGCCACGGCTTCCGCTGCCAGTTTGCCAACGGCATCTTCCAGCT
GTGGTTTCACTTCAAGCGCTACCGCTATCGGCGGTGA

Translation (758 aa):
MGRDTRSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRERRSDSEEERWQRSGMR
SRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSL
QERLRLREERKQQEELMKAFETPEEKRARRLAKKEAKERKKREKMGWGEEYMGYTNTDNPFGDNNLLGTF
IWNKALEKKGISHLEEKELKERNKRIQEDNRLELQKVKQLRLEREREKAMREQELEMLQREKEAEHFKTW
EEQEDNFHLQQAKLRSKIRIRDGRAKPIDLLAKYISAEDDDLAVEMHEPYTFLNGLTVADMEDLLEDIQV
YMELEQGKNADFWRDMTTITEDEISKLRKLEASGKGPGERREGVNASVSSDVQSVFKGKTYNQLQVIFQG
IEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLYKLKQEQGVESEPLFPILKQEPQSP
SRSLEPEDAAPTPPGPSSEGGPAEAEVDGATPTEGDGDGDGEGEGEGEAVLMEEDLIQQSLDDYDAGRYS
PRLLTAHELPLDAHVLEPDEDLQRLQLSRQQLQVTGDASESAEDIFFRRAKEGMGQDEAQFSVEMPLTGK
AYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLIDKRSTPEYFLEACA
DNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQLWFHFKRYRYRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH