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Report for CCDS18087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18087.1 Public Mus musculus 4 Fancg 23 108 98 CCDS HistoryNCBI Gene:60534Re-query CCDS DB by CCDS ID:18087.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030165.4 ENSMUSP00000030165.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030165.4Link to Ensembl Protein Viewer:ENSMUSP00000030165.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030165Re-query CCDS DB by Protein ID:ENSMUSP00000030165
Original member NCBI NM_053081.2 NP_444311.1 Updated not alive Link to Nucleotide Sequence:NM_053081.2Link to Protein Sequence:NP_444311.1Re-query CCDS DB by Nucleotide ID:NM_053081Re-query CCDS DB by Protein ID:NP_444311
Current member NCBI NM_053081.3 NP_444311.1 Accepted alive Link to Nucleotide Sequence:NM_053081.3Link to Protein Sequence:NP_444311.1Re-query CCDS DB by Nucleotide ID:NM_053081Re-query CCDS DB by Protein ID:NP_444311Link to BLAST:NP_444311.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444311.1 623 Q9EQR6 623 100% 0 0

Chromosomal Locations for CCDS 18087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43002984 43003092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43003227 43003344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43003783 43003932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43004559 43004605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43004744 43005033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43005211 43005277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43006462 43006613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43006750 43006896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43006984 43007114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43007268 43007403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43008711 43008913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43009148 43009279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43009707 43009800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43010002 43010097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGTCCAGCCAGGTCATTCCAGCCCTCCCCAAAACATTTTCCAGTAGCCTGGACCTGTGGAGGGAAAAGA
ACGACCAGCTTGTTAGACAGGCTAAGCAACTCACCAGGGATTCTCGTCCCTCTCTGAGGCGACAGCAATC
GGCCCAAGACACACTGGAAGGGCTTAGGGAACTCCTCCTCACTCTACAAGGACTCCCTGCTGCTGTCCCC
GCTCTCCCCTTGGAGCTGACTGTCCTCTGTAATTGTATAATCCTGAGGGCTAGCCTAGTCCAGGCTTTCA
CTGAAGATCTTACCCAGGATCTTCAAAGGGGCCTCGAAAGAGTGCTGGAGGCCCAGCATCACCTGGAGCC
CAAGTCACAGCAGGGACTCAAGGAGCTGTGGCACTCTGTCCTCTCTGCTTCCTCCCTTCCACCGGAGCTG
CTGCCTGCCTTACACTGCCTGGCCAGCCTTCAAGCTGTCTTCTGGATGAGTACCGACCACCTGGAGGACC
TGACCTTGCTGTTACAAACCCTAAATGGCAGCCAGACTCAGTCCTCTGAGGATCTGCTACTACTGCTAAA
ATCCTGGAGTCCTCCAGCTGAGGAGTCACCCGCCCCACTGATTCTGCAGGATGCCGAGAGTTTGAGGGAT
GTCCTTCTGACTGCATTTGCCTGCCGCCAAGGCTTCCAGGAGCTAATCACAGGGAGCCTGCCCCATGCAC
AGAGCAACCTGCATGAAGCAGCCTCAGGTCTGTGTCCGCCGTCCGTGTTAGTCCAGGTGTACACGGCCCT
GGGGGCCTGTCTCCGTAAGATGGGAAATCCACAGAGAGCACTGTTGTACTTGACTGAAGCCCTGAAAGTG
GGAACAACCTGTGCCCTTCCGCTTCTGGAGGCTTCCAGAGTATATAGGCAACTAGGAGACAGAGCAGCAG
AACTGGAGAGTCTGGAACTGCTGGTTGAGGCCTTGAGTGCCACCCATAGTTCTGAAACATTCAAAAGTCT
CATTGAAGTAGAATTGCTACTTCCACAACCTGACCCAGCCTCTCCTCTTCATTGTGGCACACAGAGCCAG
GCCAAGCACCTGCTAGCAAGTCGATGCCTGCAGACGGGGAGGGCAGAAGATGCTGCAGAGCATTACCTGG
ACCTGCTGGCAATGTTGCTGGGTGGCTCAGAGACAAGGTTCTCCCCACCCACCTCCTCTCTAGGTCCCTG
TATACCAGAGTTATGTCTGGAGGCAGCAGCAGCACTGATCCAGGCAGGCCGAGCCTTAGACGCTTTGACT
GTGTGTGAGGAGCTGCTCAACCGTACCTCGTCTCTGCTTCCCAAAATGTCCTCCTTGTGGGAAAATGCCA
GGAAAAGAGCCAAAGAACTGCCGTGTTGCCCAGTCTGGGTCTCTGCCACCCACCTGCTTCAGGGCCAGGC
CTGGTCACAACTAAAGGCTCAGAAAGAGGCACTTAGTGAATTTAGCCAGTGTCTTGAGCTGCTCTTTCGG
ACCCTGCCTGAGGACAAAGAACAAGGCTCCGACTGTGAGCAGAAGTGTAGGTCTGACGTGGCACTGAAAC
AGCTGCGAGTGGCTGCTCTGATCAGTCGTGGACTGGAGTGGGTAGCCAGTGGCCAGGATACCAAAGCCTT
AAGTGACTTCCTCCTCAGTGTGCAGATATGCCCAGGCAATAGAGATGGCTCCTTTTACCTGCTTCAGACT
CTGAAAAGATTGGATCGGAAGAATGAGGCCAGTGCTTTTTGGCGGGAGGCCCACAGCCAGCTGCCACTGG
AGGACGCTGCCGGGTCTCTTCCACTGTATTTAGAAACCTGTTTGAGCTGGATCCATCCCCCTAACCGCGA
AGCCTTCCTTGAGGAGTTTGGGACTTCGGTGTTGGAGTCTTGTGTCCTTTAG

Translation (623 aa):
MSSQVIPALPKTFSSSLDLWREKNDQLVRQAKQLTRDSRPSLRRQQSAQDTLEGLRELLLTLQGLPAAVP
ALPLELTVLCNCIILRASLVQAFTEDLTQDLQRGLERVLEAQHHLEPKSQQGLKELWHSVLSASSLPPEL
LPALHCLASLQAVFWMSTDHLEDLTLLLQTLNGSQTQSSEDLLLLLKSWSPPAEESPAPLILQDAESLRD
VLLTAFACRQGFQELITGSLPHAQSNLHEAASGLCPPSVLVQVYTALGACLRKMGNPQRALLYLTEALKV
GTTCALPLLEASRVYRQLGDRAAELESLELLVEALSATHSSETFKSLIEVELLLPQPDPASPLHCGTQSQ
AKHLLASRCLQTGRAEDAAEHYLDLLAMLLGGSETRFSPPTSSLGPCIPELCLEAAAALIQAGRALDALT
VCEELLNRTSSLLPKMSSLWENARKRAKELPCCPVWVSATHLLQGQAWSQLKAQKEALSEFSQCLELLFR
TLPEDKEQGSDCEQKCRSDVALKQLRVAALISRGLEWVASGQDTKALSDFLLSVQICPGNRDGSFYLLQT
LKRLDRKNEASAFWREAHSQLPLEDAAGSLPLYLETCLSWIHPPNREAFLEEFGTSVLESCVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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