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Report for CCDS15458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15458.1 Public Mus musculus 1 Lrrc52 23 108 98 CCDS HistoryNCBI Gene:240899Re-query CCDS DB by CCDS ID:15458.1Re-query CCDS DB by GeneID:240899See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036643.5 ENSMUSP00000047213.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036643.5Link to Ensembl Protein Viewer:ENSMUSP00000047213.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036643Re-query CCDS DB by Protein ID:ENSMUSP00000047213
Original member Current member NCBI NM_001013382.3 NP_001013400.1 Accepted alive Link to Nucleotide Sequence:NM_001013382.3Link to Protein Sequence:NP_001013400.1Re-query CCDS DB by Nucleotide ID:NM_001013382Re-query CCDS DB by Protein ID:NP_001013400Link to BLAST:NP_001013400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013400.1 314 Q5M8M9 314 100% 0 0

Chromosomal Locations for CCDS 15458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167445801 167446123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167466093 167466714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTCCCTTGCTTCAGGCCCTAGCTCCAAGTTGTTACTCTTTTCTCTTGGAATGGGGTTGGTATCAGGGT
CCAAGTGTCCAAACAAGTGTGTGTGTCAAGACCAAGAAGTAGCCTGCATAGATTTGCACCTAACGGAATA
CCCAGCTGATATTCCTCTGAACACCCGGAGACTATACCTGAACAATAACAAAATCACTAGTTTACCAGCT
TTGCAGCTGGGATTCCTCAGTGACCTCGTTTACTTGGACTGTCAGAACAACCGGATTCGAGAGGTGATGG
ATTATACCTTCATCGGGATCTTCAGACTCATCTACCTTGACCTCAGCTCCAACAACCTAACTTCCATCTC
CCCTTTCAGCTTCTCAGTGCTCACCAACCTGGTGCGGCTGAACATTTCACACAACCCTCACCTGTTGTAT
CTTGACAAATACGTCTTTGCCAACACCACGTCTTTGAGGTACCTGGACCTCAGAAACACCGGATTGCACA
TCATCGACCATAATGGCTTCCACCACCTGGTGGTGCTCCAGACTCTGTACCTAAGTGGGAACCCCTGGAT
ATGCAACTGCTCCTTCCTGGACTTCACCATCCACTTATTAGTGTCCCATATGGACCACCCAGATGCCCAG
AACGCCACGTGTACGGAGCCTGCTGAGCTGAAAGGGTGGCCCATCACGAAGGTGGGGAATCCACTCCAGT
ACATGTGCATCACACACCTGGACCAGCAGGACTACATCTTCTTACTGCTCATCGGCTTCTGCATCTTCGC
TGCCGGCACGGTGGCTGCCTGGCTCACGGGTGTATGTGCTGTGCTGTACCAGAATGCCCTCCGAACGTCG
AGCGGGGATGATACCGAAGATGAAACTGGGAGTAGATTCGCCAACCAGATTTTTCGAAGCAACACACACT
TGGGCCCCATTCGTCGGTTCCCTGAACTGATCTAG

Translation (314 aa):
MSLASGPSSKLLLFSLGMGLVSGSKCPNKCVCQDQEVACIDLHLTEYPADIPLNTRRLYLNNNKITSLPA
LQLGFLSDLVYLDCQNNRIREVMDYTFIGIFRLIYLDLSSNNLTSISPFSFSVLTNLVRLNISHNPHLLY
LDKYVFANTTSLRYLDLRNTGLHIIDHNGFHHLVVLQTLYLSGNPWICNCSFLDFTIHLLVSHMDHPDAQ
NATCTEPAELKGWPITKVGNPLQYMCITHLDQQDYIFLLLIGFCIFAAGTVAAWLTGVCAVLYQNALRTS
SGDDTEDETGSRFANQIFRSNTHLGPIRRFPELI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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