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Report for CCDS24836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24836.1 Public Mus musculus 11 Tekt3 23 108 98 CCDS HistoryNCBI Gene:71062Re-query CCDS DB by CCDS ID:24836.1Re-query CCDS DB by GeneID:71062See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035732.4 ENSMUSP00000042063.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035732.4Link to Ensembl Protein Viewer:ENSMUSP00000042063.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035732Re-query CCDS DB by Protein ID:ENSMUSP00000042063
Original member Current member NCBI NM_027660.1 NP_081936.1 Accepted alive Link to Nucleotide Sequence:NM_027660.1Link to Protein Sequence:NP_081936.1Re-query CCDS DB by Nucleotide ID:NM_027660Re-query CCDS DB by Protein ID:NP_081936Link to BLAST:NP_081936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081936.1 490 Q6X6Z7 490 100% 0 0

Chromosomal Locations for CCDS 24836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63070007 63070585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63073425 63073508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63078112 63078182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63081254 63081397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63083735 63083957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63087207 63087361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63094626 63094842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGAACTTTTAGGTTCTACTTTGACGGCTACATATGCCCACCCTCCACCTGCATCGGCCAGCTTTCTAC
CAGCCATTGGTACCATAACATCGAGCTATAAGGACCGCTTTCCCCATCGCAATCTGACACATAGCTTGAG
CCTTCCATGGAGACCGAACACCTACTACAAAACGGCCTACAACTACCCAACCTTGGCCCCGTACTCCTCG
AGGTCCCAGAGAGTGTGTGAGAGCACCATGCTCCCTTTCGTGTCCAATAGGACCACCTTCTTCACGAGGT
ACACCCCTGACGACTGGTACCGCTCCAATCTAGTCAGCTTCCAGGAGTCCAATTCCTCACGGCACAACTC
AGAGCGACTCAGAGTGGATACATCTCGGCTCATTCAAGACAAATACCAGCAGATCCGGAAGACCCAGGCT
CACTCTACCCAAAACCTGGGAGAACGAGTCAATGACTTAGCGTTTTGGAAATCTGAAATCACACATGAGT
TGGATGAAATGATTGGAGAGACAAATGCACTGACTGATATTAAGAGAAGGCTGGAGAGGGGTTTGATAGA
GACTGAAGGCCCTCTGCAGGTTTCCCGAGAGTGTCTCTTTCACCGCGAGAAGAGAATGGGAATCGATCTT
GTTCATGATGAAGCCGAGAAAGAACTACTGGCGGAAGTTGATACCATTCTGTGTTGTCAAGAAAGAATGA
GGCAACATCTGGATAAGGCGAATGCCCAACTCGCCTCAGACAGATCTGCACAGCATGAGCTGGAGAAGGA
TCTGAGTGACAAGCAGGCCGCCCTCCGGATTGATGATAAATGCCAGCACCTGCGCAACACTTCCGAGGGC
GTCAGCTACTTCCGGGGCGTGGAGAGAGTCGATGCAACGGTATCAGTGCCCGAGACATGGGCCAAGTTTA
CGGATGACAATGTTCTCCGCTCCCAGAGTGAGAGGGCAGCTTCTGCTAAGCTCAGAGAGGAAACTGAGAA
CCTCCTGATTGTGACAGCCAATGAGATGTGGAATCAGTTCAACAAAGTGAACTTGGCTTTCACCAATCGC
ATTGCCGAGACTGTCGATGCTAAGAATAAGATTCACACTCACTTAACGAAGACCCTGCAGGAGATCTTCC
AGATTGAAATGACCATAGAATCCATCAAAAAGGCCATCAAGGAAAAGTCTGCCTTCCTGAAGGTGGCGCA
GACCCGGCTGGATGAGAGAACGAGGAGGCCAAACGTAGAGCTGTGCAGGGATATGGCTCAGTTACGCCTT
GTTAACGAGGTCTATGAGGTAGACGAGACCATCCAGACTCTGCAGCAGCGCCTGAGGGATTCGGAGGACA
CCTTGCAGTCCTTGGCCCATACCAAAGCCACCCTGGAGCATGACTTGGCTGTGAAAGCCAACACTCTGTA
CATCGACCAGGAAAAATGCATGAGCATGCGCAATAGCTACCCCAGCACCCTCCGGCTGGTGGGCTACTGC
TAG

Translation (490 aa):
MELLGSTLTATYAHPPPASASFLPAIGTITSSYKDRFPHRNLTHSLSLPWRPNTYYKTAYNYPTLAPYSS
RSQRVCESTMLPFVSNRTTFFTRYTPDDWYRSNLVSFQESNSSRHNSERLRVDTSRLIQDKYQQIRKTQA
HSTQNLGERVNDLAFWKSEITHELDEMIGETNALTDIKRRLERGLIETEGPLQVSRECLFHREKRMGIDL
VHDEAEKELLAEVDTILCCQERMRQHLDKANAQLASDRSAQHELEKDLSDKQAALRIDDKCQHLRNTSEG
VSYFRGVERVDATVSVPETWAKFTDDNVLRSQSERAASAKLREETENLLIVTANEMWNQFNKVNLAFTNR
IAETVDAKNKIHTHLTKTLQEIFQIEMTIESIKKAIKEKSAFLKVAQTRLDERTRRPNVELCRDMAQLRL
VNEVYEVDETIQTLQQRLRDSEDTLQSLAHTKATLEHDLAVKANTLYIDQEKCMSMRNSYPSTLRLVGYC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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