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Report for CCDS57355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57355.1 Public Mus musculus 5 Albfm1 23 108 98 CCDS HistoryNCBI Gene:622307Re-query CCDS DB by CCDS ID:57355.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094615.7 ENSMUSP00000092198.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094615.7Link to Ensembl Protein Viewer:ENSMUSP00000092198.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094615Re-query CCDS DB by Protein ID:ENSMUSP00000092198
Original member Current member NCBI NM_001252661.1 NP_001239590.1 Accepted alive Link to Nucleotide Sequence:NM_001252661.1Link to Protein Sequence:NP_001239590.1Re-query CCDS DB by Nucleotide ID:NM_001252661Re-query CCDS DB by Protein ID:NP_001239590Link to BLAST:NP_001239590.1

Chromosomal Locations for CCDS 57355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 90561233 90561317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90563975 90564026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90564187 90564325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90566409 90566620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90569450 90569582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90571668 90571765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90572691 90572820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90577780 90577994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90579589 90579721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90581917 90582014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90584233 90584371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90584766 90584992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90592871 90593003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 90597484 90597552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGAGGTTCTTAAAGCTCTACCCTTCATTGTTTTCTTCAGCTACAGTAAATGTGAGTCTCTCCAAACAA
GTTTACTACATGCAGCCAGGCAGCATGTCAGTGGGCAGGATCACCTGGAGGAGAACTTAGGAGTCAGTGT
CAGCATTATGGTGGCTCAGTTTCTTCAGGATGCAGCTTATGACCAAGTCCAAACCATAGCTAAAGAGCTG
CTGAAGCTTGCTGAAAAGTGTAAGCGTCTCAAACCTGAGTCACCCTCAGAGTGTGCTCATCAACTGGTGG
CTGCCTTCCTTATACACATTTGCAACAACCAAGGCCTGGTGGATAGTCACGTGTTCACTGACTGTTGTAA
GATGAAAACTGCAGCAAGACTCAGGTGCTTCCTCTCCTACAAGAAAGACGACGCAGACAGCCATGATACA
CCCCTGATTCCAAGGCCTGAACTGACCTGTGAGGTGGCTGCAGAGAATAATGTGTCCCTGAAGGAGAGGT
TCAGCTATGAAATATCTAGAAGACACCCATTCTTATACGGACCCACTATCTTGAGCATGTCTGCTTGCTA
TGATACAGCTGTTCAGTCATGTTGTCAAGAAGAGAATGAAACAGAGTGCCTGCGGACAAAGCTAGAACCC
ATCAGAAAATACATTAGAGGAATATCTGCAAGACATCATCACTTATGTGAAATTGGCACCAAATTCAACG
AGAAAGTAGCAAGTGCAGTAGAGTTGATTCTACTCACCAAAAAGCAACCTAAAGCTAATTTTTCTGAAAT
CGCCAAATTGACCATGGATGTTAAAAATCTGCATGAGACCTGTTGTGAGGGGAACACATTAGTGTGTGCC
CTGGGCAGGCGCCAGCTTATGAATTACACCTGCTCTAACCAGGCCATCTTATCCAGCAAGTTTGCTGAGT
GCTGTGAACAGCCAGAACCATTCCGCGGGGAGTGCATCGTCAACTCAGAAAATGACGACAAGCCTGACCT
TTCACCCCTGCCGCTCACAAGGTTTACAGAAGACTGGTCTGTGTGCCAACAATTCAGCGGCAACCAGGAC
AGCTTTCTACAGGAGTTTCTTTATGAATACTCAAGAAGACACCTGGAGTTGGCGGTTCCCGTGATCTTAA
GAGTCTTTGAAACATACAAACGTGTATTGGAGAAATGTTGCAAGCTAGAAAACTCCTTGGAATGCCACCA
GCCTGGGAAAGAGATGTTCCAAAAAGTGATACTTGAAAGCCGTGACCAAGTTAAAACTTACTGTGACTTA
CAGAAGCAGCTGGGCAGTAGCAGCTTCCAGGACAGGCTCACGGTGCTTTATACTAAGAAAGCTCCGCAGC
TGTCTGCCCAGGAGCTGGTGGTGTTCGTGAAGAAGATGGCAGCGGTTGCCAGGAGATGTTGCCCATTAAG
GGATGAGCTGCAGTCCGCTTGCGTGGAGGACCAGACAAAGCTGATTCTTGGAGAGCTGTGCAGAAGACAC
GGTGGGAAGCCTGTCAATGCAGGAGTGGGCCACTGCTGCGACGACTCCTATGCCTTCAGAAAGCCGTGCT
TTGATGACCTGCGAGTCGATGGCACTTACATCTCTCCACCTTTATCTTGTGACCAAGCCATTAGTCTTAA
AGAGGACTTGTGCCAAGCTCAGGACGAGGAACTGCAAATGGAAAAGCAGAAGCTCCTCAGCACCCTGGTG
AAGCAGAAGCCCCATGCAGCAGAGGATGTGTTCCATTCCATTGGCGAGAATTTTGTGCAACTGGTGGAGA
AGTGCTGCGGTGCACAGAGGAGAGACGTGTGTTTTCAAGAAGAGGGACCTCAACTGATCACGAAGTGCCA
GTCCCTCTTAGAGGCCAGCTCATCCCAGAGCGGGTTGATGTAG

Translation (620 aa):
MEVLKALPFIVFFSYSKCESLQTSLLHAARQHVSGQDHLEENLGVSVSIMVAQFLQDAAYDQVQTIAKEL
LKLAEKCKRLKPESPSECAHQLVAAFLIHICNNQGLVDSHVFTDCCKMKTAARLRCFLSYKKDDADSHDT
PLIPRPELTCEVAAENNVSLKERFSYEISRRHPFLYGPTILSMSACYDTAVQSCCQEENETECLRTKLEP
IRKYIRGISARHHHLCEIGTKFNEKVASAVELILLTKKQPKANFSEIAKLTMDVKNLHETCCEGNTLVCA
LGRRQLMNYTCSNQAILSSKFAECCEQPEPFRGECIVNSENDDKPDLSPLPLTRFTEDWSVCQQFSGNQD
SFLQEFLYEYSRRHLELAVPVILRVFETYKRVLEKCCKLENSLECHQPGKEMFQKVILESRDQVKTYCDL
QKQLGSSSFQDRLTVLYTKKAPQLSAQELVVFVKKMAAVARRCCPLRDELQSACVEDQTKLILGELCRRH
GGKPVNAGVGHCCDDSYAFRKPCFDDLRVDGTYISPPLSCDQAISLKEDLCQAQDEELQMEKQKLLSTLV
KQKPHAAEDVFHSIGENFVQLVEKCCGAQRRDVCFQEEGPQLITKCQSLLEASSSQSGLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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