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Report for CCDS18252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18252.1 Public Mus musculus 4 Orm3 23 108 98 CCDS HistoryNCBI Gene:18407Re-query CCDS DB by CCDS ID:18252.1Re-query CCDS DB by GeneID:18407See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18252.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006687.4 ENSMUSP00000006687.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006687.4Link to Ensembl Protein Viewer:ENSMUSP00000006687.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006687Re-query CCDS DB by Protein ID:ENSMUSP00000006687
Original member NCBI NM_013623.2 NP_038651.2 Updated not alive Link to Nucleotide Sequence:NM_013623.2Link to Protein Sequence:NP_038651.2Re-query CCDS DB by Nucleotide ID:NM_013623Re-query CCDS DB by Protein ID:NP_038651
Current member NCBI NM_013623.3 NP_038651.2 Accepted alive Link to Nucleotide Sequence:NM_013623.3Link to Protein Sequence:NP_038651.2Re-query CCDS DB by Nucleotide ID:NM_013623Re-query CCDS DB by Protein ID:NP_038651Link to BLAST:NP_038651.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038651.2 206 Q63805 206 98.0583% 0 4

Chromosomal Locations for CCDS 18252.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63356200 63356313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63356571 63356713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63356911 63356981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63357544 63357651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63357789 63357892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63359317 63359397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGAACTACACACGGTTCTCATCATGTTGAGCCTCCTGCCACTGTTGGAAGCTCAGAACCCAGAGCATG
CCATCAACATAGGCGACCCTATCACCAATGAGACCCTGAGCTGGCTATCTGGCAAATGGTTTCTCATTGC
TGTGGCTGACTCAGACCCTGATTATAGGCAGGAAATTCAAAAGGTACAGACTATATTTTTTTACCTTACC
CTAAACTTGATAAATGACACGATGGAGCTTCGAGAGTATCACACCAAAGATGACCACTGTGTCTATAACT
CCAACCTTCTGGGATTCCAGAGAGAGAATGGGACCCTCTTCAAGTATGAAGGAGAAGTAGAAACCCTTCT
CCACCTGAGAGTGCTAGAGAAACATGGGGCCATCATGCTTTTCTTTGACCTGAAGGATGAGAAGAAACGG
GGACTGTCCCTGAGCGCTAGAAGGCCAGATATCCCCCCGGAGCTGCGGGAAGTATTTCAGAAGGCTGTCA
CACACGTGGGCATGGATGAATCAGAAATCATATTTGTCGACTGGAAAAAGGACAGGTGCAGTGAACAGGA
AAAGAAGCATCTTGAGTTGGAGAAGGAGACCAAGAAAGATCCTGAGGAAAGCCAGGCATGA

Translation (206 aa):
MELHTVLIMLSLLPLLEAQNPEHAINIGDPITNETLSWLSGKWFLIAVADSDPDYRQEIQKVQTIFFYLT
LNLINDTMELREYHTKDDHCVYNSNLLGFQRENGTLFKYEGEVETLLHLRVLEKHGAIMLFFDLKDEKKR
GLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVDWKKDRCSEQEKKHLELEKETKKDPEESQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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