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Report for CCDS46442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46442.1 Public Homo sapiens 2 SCN7A 24 110 108 CCDS HistoryNCBI Gene:6332Re-query CCDS DB by CCDS ID:46442.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 46442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441411.2 ENSP00000403846.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441411.2Link to Ensembl Protein Viewer:ENSP00000403846.2Re-query CCDS DB by Nucleotide ID:ENST00000441411Re-query CCDS DB by Protein ID:ENSP00000403846
Original member Current member EBI ENST00000643258.1 ENSP00000496114.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000643258.1Link to Ensembl Protein Viewer:ENSP00000496114.1Re-query CCDS DB by Nucleotide ID:ENST00000643258Re-query CCDS DB by Protein ID:ENSP00000496114
Original member Current member NCBI NM_002976.4 NP_002967.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002976.4Link to Protein Sequence:NP_002967.2Re-query CCDS DB by Nucleotide ID:NM_002976Re-query CCDS DB by Protein ID:NP_002967Link to BLAST:NP_002967.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002967.2 1682 Q01118 1682 100% 0 0

Chromosomal Locations for CCDS 46442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 166405580 166406646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166409665 166409935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166410220 166410324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166412530 166412667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166413068 166413121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166416707 166416985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166421190 166421297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166423259 166423432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166427788 166427942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166429169 166429274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166432318 166432752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166441396 166441752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166443503 166443676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166444762 166445000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166447612 166447708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166456870 166457076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166462389 166462530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166465462 166465531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166465781 166465987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166470615 166470706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166472317 166472445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166473799 166473888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166474226 166474344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166477463 166477696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5049 nt):
ATGTTGGCTTCACCAGAACCTAAGGGCCTTGTTCCCTTCACTAAAGAGTCTTTTGAACTTATAAAACAGC
AT
ATTGCTAAAACACATAATGAAGACCATGAAGAAGAAGACTTAAAGCCAACTCCTGATTTGGAAGTTGG
C
AAAAAGCTTCCATTTATTTATGGAAACCTTTCTCAAGGAATGGTGTCAGAGCCCTTGGAAGATGTGGAC
CCA
TATTACTACAAGAAAAAAAATACTTTCATAGTATTAAATAAAAATAGAACAATCTTCAGATTCAATG
CG
GCTTCCATCTTGTGTACATTGTCTCCTTTCAATTGTATTAGAAGAACAACTATCAAGGTTTTGGTACA
T
CCCTTTTTCCAACTGTTTATTCTAATTAGTGTCCTGATTGATTGCGTATTCATGTCCCTGACTAATTTG
CCA
AAATGGAGACCAGTATTAGAGAATACTTTGCTTGGAATTTACACATTTGAAATACTTGTAAAACTCT
TT
GCAAGAGGTGTCTGGGCAGGATCATTTTCCTTCCTCGGTGATCCATGGAACTGGCTCGATTTCAGCGT
A
ACTGTGTTTGAGGTTATTATAAGATACTCACCTCTGGACTTCATTCCAACGCTTCAAACTGCAAGAACT
TTG
AGAATTTTAAAAATTATTCCTTTAAATCAAGGTCTGAAATCCCTTGTAGGGGTCCTGATCCACTGCT
TG
AAGCAGCTTATTGGTGTCATTATCCTAACTCTGTTTTTTCTGAGCATATTTTCTCTAATTGGGATGGG
G
CTCTTCATGGGCAACTTGAAACATAAATGTTTTCGATGGCCCCAAGAGAATGAAAATGAAACCCTGCAC
AAC
AGAACTGGAAACCCATATTATATTCGAGAAACAGAAAACTTTTATTATTTGGAAGGAGAAAGATATG
CT
CTCCTTTGTGGCAACAGGACAGATGCTGGTCAGTGTCCTGAAGGATATGTGTGTGTAAAAGCTGGCAT
A
AATCCTGATCAAGGCTTCACAAATTTTGACAGTTTTGGCTGGGCCTTATTTGCCCTATTTCGGTTAATG
GCT
CAGGATTACCCTGAAGTACTTTATCACCAGATACTTTATGCTTCTGGGAAGGTCTACATGATATTTT
TT
GTGGTGGTAAGTTTTTTGTTTTCCTTTTATATGGCAAGTTTGTTCTTAGGCATACTTGCCATGGCCTA
T
GAAGAAGAAAAGCAGAGAGTTGGTGAAATATCTAAGAAGATTGAACCAAAATTTCAACAGACTGGAAAA
GAA
CTTCAAGAAGGAAATGAAACAGATGAGGCCAAGACCATACAAATAGAAATGAAGAAAAGGTCACCAA
TT
TCCACAGACACATCATTGGATGTGTTGGAAGATGCTACTCTCAGACATAAGGAAGAACTTGAAAAATC
C
AAGAAGATATGCCCATTATACTGGTATAAGTTTGCTAAAACTTTCTTGATCTGGAATTGTTCTCCCTGT
TGG
TTAAAATTGAAAGAGTTTGTCCATAGGATTATAATGGCACCATTTACTGATCTTTTCCTTATCATAT
GC
ATAATTTTAAACGTATGTTTTCTGACCTTGGAGCATTATCCAATGAGTAAACAAACTAACACTCTTCT
C
AACATTGGAAACCTGGTTTTCATTGGAATTTTCACAGCAGAAATGATTTTTAAAATAATTGCAATGCAT
CCA
TATGGGTATTTCCAAGTAGGTTGGAACATTTTTGATAGCATGATAGTGTTCCATGGTTTAATAGAAC
TT
TGTCTAGCAAATGTTGCAGGAATGGCTCTTCTTCGATTATTCAGGATGTTAAGAATTTTCAAGTTGGG
A
AAGTATTGGCCAACATTCCAGATTTTGATGTGGTCTCTTAGTAACTCATGGGTGGCCCTGAAAGACTTG
GTC
CTGTTGTTGTTCACATTCATCTTCTTTTCTGCTGCATTCGGCATGAAGCTGTTTGGTAAGAATTATG
AA
GAATTTGTCTGCCACATAGACAAAGACTGTCAACTCCCACGCTGGCACATGCATGACTTTTTCCACTC
C
TTCCTGAATGTGTTCCGAATTCTCTGTGGAGAGTGGGTAGAGACCTTGTGGGACTGTATGGAGGTTGCA
GGC
CAATCCTGGTGTATTCCTTTTTACCTGATGGTCATTTTAATTGGAAATTTACTGGTACTTTACCTGT
TT
CTGGCATTGGTGAGCTCATTTAGTTCATGCAAGGATGTAACAGCTGAAGAGAATAATGAAGCAAAAAA
T
CTCCAGCTTGCAGTGGCAAGAATTAAAAAAGGAATAAACTATGTGCTTCTTAAAATACTATGCAAAACA
CAA
AATGTCCCAAAGGACACAATGGACCATGTAAATGAGGTATATGTTAAAGAAGATATTTCTGACCATA
CC
CTTTCTGAATTGAGCAACACCCAAGATTTTCTCAAAGATAAGGAAAAAAGCAGTGGCACAGAGAAAAA
C
GCTACTGAAAATGAGAGCCAATCACTTATCCCCAGTCCTAGTGTCTCAGAAACTGTACCAATTGCTTCA
GGA
GAATCTGATATAGAAAATCTGGATAATAAGGAGATTCAGAGTAAGTCTGGTGATGGAGGCAGCAAAG
AG
AAAATAAAGCAATCTAGCTCATCTGAATGCAGTACTGTTGATATTGCTATCTCTGAAGAAGAAGAAAT
G
TTCTATGGAGGTGAAAGATCAAAGCATCTGAAAAATGGTTGCAGACGCGGATCTTCACTTGGTCAAATC
AGT
GGAGCATCCAAGAAAGGAAAAATCTGGCAGAACATCAGGAAAACCTGCTGCAAGATTGTAGAGAACA
AT
TGGTTTAAGTGTTTTATTGGGCTTGTTACTCTGCTCAGCACTGGCACTCTGGCTTTTGAAGATATATA
T
ATGGATCAGAGAAAGACAATTAAAATTTTATTAGAATATGCTGACATGATCTTTACTTATATCTTCATT
CTG
GAAATGCTTCTAAAATGGATGGCATATGGTTTTAAGGCCTATTTCTCTAATGGCTGGTACAGGCTGG
AC
TTCGTGGTTGTTATTGTGTTTTGTCTTAGCTTAATAGGCAAAACTCGGGAAGAACTAAAACCTCTTAT
T
TCCATGAAATTCCTTCGGCCCCTCAGAGTTCTATCTCAATTTGAAAGAATGAAGGTGGTTGTGAGAGCT
TTG
ATCAAAACAACCTTACCCACTTTGAATGTGTTTCTTGTCTGCCTGATGATCTGGCTGATTTTTAGTA
TC
ATGGGAGTAGACTTATTTGCTGGCAGATTCTATGAATGCATTGACCCAACAAGTGGAGAAAGGTTTCC
T
TCATCTGAAGTCATGAATAAGAGTCGGTGTGAAAGCCTTCTGTTTAACGAATCCATGCTATGGGAAAAT
GCA
AAAATGAACTTTGATAATGTTGGAAATGGTTTCCTTTCTCTGCTTCAAGTAGCAACATTTAATGGAT
GG
ATCACTATTATGAATTCAGCAATTGATTCTGTTGCTGTTAATATACAGCCTCATTTTGAAGTCAACAT
C
TACATGTATTGTTACTTTATCAACTTTATTATATTTGGAGTATTTCTCCCTCTGAGTATGCTGATTACT
GTT
ATTATTGATAATTTCAACAAGCATAAAATAAAGCTGGGAGGCTCAAATATCTTTATAACGGTTAAAC
AG
AGAAAACAGTACCGCAGGCTGAAGAAGCTAATGTATGAGGATTCTCAAAGACCAGTACCTCGCCCATT
A
AACAAGCTCCAAGGATTCATCTTTGATGTGGTAACAAGCCAAGCTTTTAATGTCATTGTTATGGTTCTT
ATA
TGTTTCCAAGCAATAGCCATGATGATAGACACTGATGTTCAGAGTCTACAAATGTCCATTGCTCTCT
AC
TGGATTAACTCAATTTTTGTTATGCTATATACTATGGAATGTATACTGAAGCTCATCGCTTTCCGTTG
T
TTTTATTTCACCATTGCGTGGAACATTTTTGATTTTATGGTGGTTATTTTCTCCATCACAGGACTATGT
CTG
CCTATGACAGTAGGATCCTACCTTGTGCCTCCTTCACTTGTGCAACTGATACTTCTCTCACGGATCA
TT
CACATGCTGCGTCTTGGAAAAGGACCAAAGGTGTTTCATAATCTGATGCTTCCTTTGATGCTGTCCCT
C
CCAGCATTATTGAACATCATTCTTCTCATCTTCCTGGTCATGTTCATCTATGCCGTATTTGGAATGTAT
AAT
TTTGCCTATGTTAAAAAAGAAGCTGGAATTAATGATGTGTCTAATTTTGAAACCTTTGGCAACAGTA
TG
CTCTGTCTTTTTCAAGTTGCAATATTTGCTGGTTGGGATGGGATGCTTGATGCAATTTTCAACAGTAA
A
TGGTCTGACTGTGATCCTGATAAAATTAACCCTGGGACTCAAGTTAGAGGAGATTGTGGGAACCCCTCT
GTT
GGGATTTTTTATTTTGTCAGTTATATCCTCATATCATGGCTGATCATTGTAAATATGTACATTGTTG
TT
GTCATGGAGTTTTTAAATATTGCTTCTAAGAAGAAAAACAAGACCTTGAGTGAAGATGATTTTAGGAA
A
TTCTTTCAGGTATGGAAAAGGTTTGATCCTGATAGGACCCAGTACATAGACTCTAGCAAGCTTTCAGAT
TTT
GCAGCTGCTCTTGATCCTCCTCTTTTCATGGCAAAACCAAACAAGGGCCAGCTCATTGCTTTGGACC
TC
CCCATGGCTGTTGGGGACAGAATTCATTGCCTCGATATCTTACTTGCTTTTACAAAGAGAGTTATGGG
T
CAAGATGTGAGGATGGAGAAAGTTGTTTCAGAAATAGAATCAGGGTTTTTGTTAGCCAACCCTTTTAAG
ATC
ACATGTGAGCCAATTACGACTACTTTGAAACGAAAACAAGAGGCAGTTTCAGCAACCATCATTCAAC
GT
GCTTATAAAAATTACCGCTTGAGGCGAAATGACAAAAATACATCAGATATTCATATGATAGATGGTGA
C
AGAGATGTTCATGCTACTAAAGAAGGTGCCTATTTTGACAAAGCTAAGGAAAAGTCACCTATTCAAAGC
CAG
ATCTAA


Translation (1682 aa):
MLASPEPKGLVPFTKESFELIKQHIAKTHNEDHEEEDLKPTPDLEVGKKLPFIYGNLSQGMVSEPLEDVD
P
YYYKKKN
TFIVLNKNRTIFRFNAASILCTLSPFNCIRRTTIKVLVHPFFQLFILISVLIDCVFMSLTNL
P
KWRPVL
ENTLLGIYTFEILVKLFARGVWAGSFSFLGDPWNWLDFSVTVFEVIIRYSPLDFIPTLQTART
L
RILKIIPLNQ
GLKSLVGVLIHCLKQLIGVIILTLFFLSIFSLIGMGLFMGNLKHKCFRWPQENENETLH
N
RTGNPYYIR
ETENFYYLEGERYALLCGNRTDAGQCPEGYVCVKAGINPDQGFTNFDSFGWALFALFRLM
A
QDYPEVLYHQ
ILYASGKVYMIFFVVVSFLFSFYMASLFLGILAMAYEEEKQRVGEISKKIEPKFQQTGK
E
LQEGNETDE
AKTIQIEMKKRSPISTDTSLDVLEDATLRHKEELEKSKKICPLYWYKFAKTFLIWNCSPC
W
LKLKEFVHRIIMAPFTDLFLIICIILNVCFLTLEHYPMSKQTNTLLNIGNL
VFIGIFTAEMIFKIIAMH
P
YGYFQVGWNIFDSMIVFHGLIELCLANVAGMALLRLFRM
LRIFKLGKYWPTFQILMWSLSNSWVALKDL
V
LLLFTFIFFSAAFGMKLFGKNYEEFVCHIDKDCQLPRWHMHDFFHSFLNVFRILCGEWVETLWDCMEVA
G
QSWCIPFYLMVILIGNLL
VLYLFLALVSSFSSCKDVTAEENNEAKNLQLAVARIKKGINYVLLKILCKT
Q
NVPKDTMDHVNEVYVKEDISDHTLSELSNTQDFLKDKEKSSGTEKNATENESQSLIPSPSVSETVPIAS
G
ESDIENLDNKEIQSKSGDGGSKE
KIKQSSSSECSTVDIAISEEEEMFYGGERSKHLKNGCRRGSSLGQI
S
GASKKGKIWQNIRKTCCKIVENNWFKCFIGLVTLLSTGTL
AFEDIYMDQRKTIKILLEYADMIFTYIFI
L
EMLLKWMAYGFKAYFSNGWYRLDFVVVI
VFCLSLIGKTREELKPLISMKFLRPLRVLSQFERMKVVVRA
L
IKTTLPTLNVFLVCLMIWLIFSIMGVDLFAGRFYECIDPTSGERFPSSEVMNKSRCESLLFNESMLWEN
A
KMNFDNVGNGFLSLLQV
ATFNGWITIMNSAIDSVAVNIQPHFEVNIYMYCYFINFIIFGVFLPLSMLIT
V
IIDNFNKHKIK
LGGSNIFITVKQRKQYRRLKKLMYEDSQRPVPRPLNKLQGFIFDVVTSQAFNVIVMVL
I
CFQAIAMMIDTDVQSLQMSIALYWINSIFVMLYTMECILKLIAFRCFYFTIAWNIFDFMVVIFSIT
GLC
L
PMTVGSYLVPPSLVQLILLSRIIHMLRLGKGPKVFHNLMLPLMLSLPALLNIILLIFLVMFIYAVFGMY
N
FAYVKKEAGINDVSNFETFGNSMLCLFQVAIFAGWDGMLDAIFNSKWSDCDPDKINPGTQVRGDCGNPS
V
GIFYFVSYILISWLIIVNMYIVVVMEFLNIASKKKNKTLSEDDFRKFFQVWKRFDPDRTQYIDSSKLSD
F
AAALDPPLFMAKPNKGQLIALDLPMAVGDRIHCLDILLAFTKRVMGQDVRMEKVVSEIESGFLLANPFK
I
TCEPITTTLKRKQEAVSATIIQRAYKNYRLRRNDKNTSDIHMIDGDRDVHATKEGAYFDKAKEKSPIQS
Q
I




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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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